Table 3a: Ten most common PEs found in the core promoter group with GC content in the range [0, 0.4). The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 26.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
-1 CdxA" 26 100 104 0.8736
+1 CdxA" 26 100 115 0.8305
+1 GEN_INI" 25 96.15 188 1.1029
+1 C/EBP" 25 96.15 102 1.0004
-1 GEN_INI" 24 92.31 156 0.8052
+1 cap" 23 88.46 44 1.1334
-1 STAT1" 22 84.62 38 1.6635
-1 C/EBP" 22 84.62 96 0.9886
-1 SRY" 22 84.62 40 0.8789
+1 C/EBPalpha" 21 80.77 28 1.6675



Table 3b: Top 10 PEs based on the over-representation index (ORI) value found in the core promoter group with GC content in the range [0, 0.4). The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 26.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
-1 c-Ets-1 68" 3 11.54 3 248.826
-1 TCF-4" 3 11.54 5 66.9779
+1 ER" 3 11.54 3 30.9159
-1 Elk-1" 4 15.38 4 26.8273
-1 v-Maf" 3 11.54 3 26.1124
+1 Pax-3" 3 11.54 3 18.2960
+1 XPF-1" 4 15.38 5 11.8350
+1 LEF1" 3 11.54 5 10.8142
+1 HSF2" 7 26.92 7 10.7463
-1 TTF1" 4 15.38 6 10.1173



Table 4a: Ten most common PEs found in the core promoter group with GC content in the range [0.4, 0.5). The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 118.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
-1 C/EBP" 112 94.92 361 1.2417
-1 CdxA" 111 94.07 331 1.1545
+1 GEN_INI" 109 92.37 786 1.0542
-1 GEN_INI" 107 90.68 682 0.8361
+1 C/EBP" 103 87.29 280 0.7678
+1 cap" 100 84.75 221 1.2024
+1 CdxA" 99 83.9 289 0.7611
+1 STAT5A" 93 78.81 182 1.5327
+1 Pax-2" 88 74.58 155 1.4346
-1 cap" 87 73.73 175 0.8306



Table 4b: Top 10 PEs based on the over-representation index (ORI) value found in the core promoter group with GC content in the range [0.4, 0.5). The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 118.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
+1 TATA" 45 38.14 65 15.6735
+1 LBP-1" 13 11.02 13 14.0447
+1 TFIIA" 24 20.34 25 8.1648
+1 AP-4" 28 23.73 54 6.7526
-1 MYB" 17 14.41 18 4.8585
-1 TCF-1(P)" 13 11.02 13 4.2990
+1 ETS" 23 19.49 26 4.2491
-1 HSF2" 17 14.41 17 4.1255
+1 STAT" 17 14.41 20 3.9528
-1 ELF-1" 21 17.8 22 3.8785



Table 5a: Ten most common PEs found in the core promoter group with GC content in the range [0.5, 0.6). The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 334.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
+1 GEN_INI" 287 85.93 1564 0.8072
-1 GEN_INI" 285 85.33 1690 0.8099
+1 C/EBP" 273 81.74 688 0.9569
+1 cap" 247 73.95 421 0.8299
+1 STAT1" 240 71.86 418 1.9354
-1 C/EBP" 240 71.86 515 0.6897
-1 cap" 235 70.36 445 0.8140
+1 Spz1" 229 68.56 478 1.3531
+1 STAT5A" 221 66.17 411 1.4406
-1 Pax-2" 221 66.17 340 1.2391



Table 5b: Top 10 PEs based on the over-representation index (ORI) value found in the core promoter group with GC content in the range [0.5, 0.6). The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 334.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
+1 TATA" 60 17.96 79 30.1101
+1 c-Ets-1 68" 36 10.78 40 25.5889
+1 CREB" 46 13.77 82 23.9116
-1 CREB" 47 14.07 80 23.8655
-1 Elk-1" 82 24.55 132 22.0506
+1 Elk-1" 75 22.46 118 21.5084
-1 PEA3" 35 10.48 41 17.1154
+1 PEA3" 36 10.78 37 15.0788
-1 v-Myb" 37 11.08 45 9.1759
+1 c-Ets-1(p54)" 87 26.05 153 8.7451



Table 6a: Ten most common PEs found in the core promoter group with GC content in the range [0.6, 1.0]. The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 1293.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
+1 E2F-1" 1088 84.15 2868 3.8112
+1 Spz1" 1080 83.53 3735 1.5884
+1 ZF5" 1072 82.91 3557 3.5493
-1 ZF5" 1030 79.66 3253 3.1850
-1 E2F-1" 1023 79.12 2322 3.0344
-1 GEN_INI" 981 75.87 4663 0.7287
+1 GEN_INI" 930 71.93 3874 0.6708
-1 AP-2" 914 70.69 1919 1.5104
+1 E2F" 904 69.91 2007 8.6349
+1 AP-2" 880 68.06 1813 1.4470



Table 6b: Top 10 PEs based on the over-representation index (ORI) value found in the core promoter group with GC content in the range [0.6, 1.0]. The extended version of this table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 1293.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
+1 Elk-1" 295 22.82 428 9.8841
+1 CREB" 180 13.92 302 9.3056
+1 E2F" 904 69.91 2007 8.6349
-1 Elk-1" 298 23.05 430 8.1388
-1 CREB" 195 15.08 316 7.9465
-1 E2F" 833 64.42 1705 7.2820
+1 c-Ets-1(p54)" 273 21.11 483 6.0072
+1 ETF" 598 46.25 1157 5.8272
-1 c-Ets-1(p54)" 272 21.04 483 4.6803
+1 MYB" 138 10.67 146 4.2953