Table 3a: Most common PEs found in the core promoter group with GC content in the range [0, 0.4). This table contains all PEs which are found in at least 10% of this group of core promoters. The total number of the core promoters in this group is 26.
Strand Name of TFBS Total # of promoters in which TFBS is found % of promoters in which TFBS is found Total # of TFBSs found Over-representation index (ORI)
-1 CdxA" 26 100 104 0,8736
+1 CdxA" 26 100 115 0,8305
+1 GEN_INI" 25 96,15 188 1,1029
+1 C/EBP" 25 96,15 102 1,0004
-1 GEN_INI" 24 92,31 156 0,8052
+1 cap" 23 88,46 44 1,1334
-1 STAT1" 22 84,62 38 1,6635
-1 C/EBP" 22 84,62 96 0,9886
-1 SRY" 22 84,62 40 0,8789
+1 C/EBPalpha" 21 80,77 28 1,6675
+1 SRY" 21 80,77 40 1,5316
-1 Pax-2" 20 76,92 44 1,0471
+1 Msx-1" 20 76,92 35 1,0219
+1 Oct-1" 20 76,92 44 0,9751
+1 Pax-4" 20 76,92 48 0,92
-1 cap" 20 76,92 39 0,8976
-1 STAT5A" 19 73,08 47 1,4463
-1 C/EBPalpha" 19 73,08 24 1,3149
+1 STAT5A" 19 73,08 39 0,9652
-1 Oct-1" 19 73,08 33 0,6146
-1 Pax-4" 19 73,08 36 0,5043
-1 STAT4" 18 69,23 25 2,4453
+1 STAT1" 18 69,23 32 0,9359
-1 HOXA3" 18 69,23 36 0,7511
+1 Pax-2" 17 65,38 36 1,0042
-1 Msx-1" 17 65,38 27 0,9585
+1 STAT4" 16 61,54 21 1,5045
+1 HOXA3" 16 61,54 24 0,434
-1 FAC1" 15 57,69 34 0,7047
+1 FAC1" 14 53,85 42 1,7881
-1 En-1" 13 50 22 1,2078
+1 Ncx" 13 50 16 0,8731
+1 DBP" 12 46,15 16 5,4564
-1 c-Myb" 12 46,15 15 2,3013
+1 STAT3" 12 46,15 17 1,6746
+1 TATA" 11 42,31 16 4,2235
+1 TTF-1" 11 42,31 14 1,3597
+1 YY1" 11 42,31 21 0,8392
+1 En-1" 11 42,31 16 0,4593
-1 Spz1" 10 38,46 13 3,1926
-1 Pit-1" 10 38,46 13 2,2124
+1 C/EBPbeta" 10 38,46 10 2,1471
-1 FOXM1" 10 38,46 20 1,9051
+1 MEF-2" 10 38,46 13 1,8986
+1 HNF-3" 10 38,46 29 1,7758
-1 MEF-2" 10 38,46 15 1,5683
+1 AP-2rep" 10 38,46 12 1,0835
+1 Pbx-1" 10 38,46 12 1,0537
-1 GATA-6" 10 38,46 12 0,8555
-1 TTF-1" 10 38,46 14 0,8215
-1 YY1" 10 38,46 21 0,78
-1 Pax-8" 10 38,46 15 0,7064
+1 SMAD" 9 34,62 9 1,7306
-1 SMAD" 9 34,62 11 1,6633
+1 Xvent-1" 9 34,62 9 0,6542
-1 Tst-1" 9 34,62 13 0,6502
+1 GATA-6" 9 34,62 11 0,6413
+1 Pax-8" 9 34,62 20 0,6331
-1 Ncx" 9 34,62 12 0,51
-1 HNF-3" 9 34,62 15 0,3869
-1 Zic1" 8 30,77 11 6,5182
-1 HSF1" 8 30,77 9 3,7056
+1 c-Myb" 8 30,77 11 1,7595
-1 C/EBPbeta" 8 30,77 9 1,7514
-1 TATA" 8 30,77 11 1,4788
+1 GKLF" 8 30,77 19 1,1247
+1 HNF-1" 8 30,77 16 1,0487
+1 GATA-1" 8 30,77 9 0,7325
-1 STAT3" 8 30,77 9 0,6093
-1 GKLF" 8 30,77 13 0,5458
-1 Pbx-1" 8 30,77 9 0,3448
+1 HSF2" 7 26,92 7 10,7463
-1 c-Ets-1(p54)" 7 26,92 11 7,1167
+1 MYB" 7 26,92 7 6,7571
+1 HSF1" 7 26,92 9 3,7804
-1 TEF-1" 7 26,92 8 3,6048
-1 GR" 7 26,92 7 2,869
-1 AP-1" 7 26,92 17 2,1232
+1 TBP" 7 26,92 7 1,5339
-1 p53 decamer" 7 26,92 8 0,9077
-1 AP-2rep" 7 26,92 10 0,8528
+1 GATA-2" 7 26,92 8 0,7473
-1 GATA-1" 7 26,92 8 0,6948
+1 FOXM1" 7 26,92 11 0,6226
+1 GATA-3" 7 26,92 12 0,4228
-1 GATA-3" 7 26,92 9 0,3423
+1 Tst-1" 7 26,92 8 0,3237
-1 FOXD3" 6 23,08 19 2,6086
+1 NF-1" 6 23,08 7 2,0461
-1 NF-1" 6 23,08 8 1,9225
+1 AP-1" 6 23,08 15 1,6594
+1 GATA-4" 6 23,08 6 1,5729
-1 GATA-4" 6 23,08 7 1,1909
+1 STAT6" 6 23,08 8 1,1345
-1 HNF-1" 6 23,08 11 0,8737
-1 DBP" 6 23,08 8 0,7678
-1 HOXA4" 6 23,08 6 0,7581
+1 p53 decamer" 6 23,08 6 0,7374
+1 AP-3" 6 23,08 6 0,729
-1 Xvent-1" 6 23,08 7 0,61
-1 AP-3" 6 23,08 6 0,5362
-1 v-Myb" 5 19,23 5 9,7524
-1 FOXO1" 5 19,23 5 4,2326
+1 IRF1" 5 19,23 5 4,1847
-1 ELF-1" 5 19,23 6 3,999
+1 TCF11" 5 19,23 5 2,9996
-1 Crx" 5 19,23 5 0,7204
+1 HOXA4" 5 19,23 6 0,6451
+1 Cdc5" 5 19,23 5 0,5095
+1 Octamer" 5 19,23 5 0,3031
-1 Elk-1" 4 15,38 4 26,8273
+1 XPF-1" 4 15,38 5 11,835
-1 TTF1" 4 15,38 6 10,1173
+1 TTF1" 4 15,38 4 9,052
+1 SRF" 4 15,38 4 4,9331
+1 LEF-1" 4 15,38 8 4,6702
+1 IRF-7" 4 15,38 4 4,3535
-1 FOXO4" 4 15,38 4 3,709
+1 ETS" 4 15,38 5 3,6431
-1 C/EBPgamma" 4 15,38 5 2,4858
-1 SF-1" 4 15,38 4 2,1324
+1 NF-AT" 4 15,38 4 1,7693
+1 E2F-1" 4 15,38 4 1,6175
-1 FOX" 4 15,38 6 1,5027
-1 HNF-3beta" 4 15,38 4 1,4262
+1 SF-1" 4 15,38 4 1,3196
+1 Evi-1" 4 15,38 4 1,2512
-1 FOXJ2" 4 15,38 5 1,1734
-1 HMG IY" 4 15,38 4 0,9061
+1 Crx" 4 15,38 6 0,7815
+1 GR" 4 15,38 4 0,6279
-1 STAT6" 4 15,38 5 0,5764
-1 Cdc5" 4 15,38 5 0,4416
-1 Nkx6-2" 4 15,38 4 0,3148
-1 Octamer" 4 15,38 5 0,3027
+1 Pit-1" 4 15,38 5 0,2653
-1 c-Ets-1 68" 3 11,54 3 248,826
-1 TCF-4" 3 11,54 5 66,9779
+1 ER" 3 11,54 3 30,9159
-1 v-Maf" 3 11,54 3 26,1124
+1 Pax-3" 3 11,54 3 18,296
+1 LEF1" 3 11,54 5 10,8142
-1 TCF-1(P)" 3 11,54 4 6,9573
-1 Zic2" 3 11,54 5 6,4896
+1 v-Myb" 3 11,54 3 6,2478
-1 AP-2gamma" 3 11,54 3 4,8956
+1 Bach2" 3 11,54 3 4,677
-1 Vmw65" 3 11,54 3 4,1063
-1 NF-kappaB" 3 11,54 3 2,9862
-1 AREB6" 3 11,54 3 2,9134
-1 POU1F1" 3 11,54 3 2,7506
-1 Poly A" 3 11,54 3 2,6493
+1 TCF-1(P)" 3 11,54 3 2,5766
-1 PPAR direct repeat 1" 3 11,54 3 2,5005
-1 SRF" 3 11,54 4 2,3748
-1 Sp1" 3 11,54 5 1,8826
+1 Pax" 3 11,54 3 1,74
-1 HSF2" 3 11,54 3 1,6925
+1 FOXJ2" 3 11,54 5 1,4209
-1 E2F-1" 3 11,54 3 1,2574
-1 p300" 3 11,54 4 1,1679
-1 CIZ" 3 11,54 3 0,8356
-1 Zic3" 3 11,54 3 0,807
+1 Lyf-1" 3 11,54 3 0,7437
-1 MZF1" 3 11,54 3 0,6268
-1 HNF-3alpha" 3 11,54 3 0,6251
+1 GATA" 3 11,54 3 0,37
-1 GATA" 3 11,54 3 0,3652
-1 Cdx-2" 3 11,54 3 0,3541
+1 HNF-3alpha" 3 11,54 3 0,2514
+1 Spz1" 3 11,54 3 0,2005
+1 Nkx6-2" 3 11,54 3 0,1762
-1 GATA-2" 3 11,54 3 0,1282