Brylinski et al., In Silico Biol. 5, 0022 (2004); Supplementary material
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 5RAT.fasta Number of residues : 124 4x4 library : library2003 SPI : 95.0 Sequence: KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV Ellipse-derived structures Structure 1: CCCCCCCCCCCDEECCECEFCECDCCCCCCCCDGDDCCEEFCEEEEEEEFCCECCCCCDCEFEFFCDGFDDEEEFCEFEFEEEEEFFCCFEFDEFEEEEEEEEEFEEEEEEAEFEEFDEEECCC Structure 2: -CCCCCCCCCCDEECCEEFFEECDCCCCCCCCDGDDCCEEFCEEEEEEEFCCCCCCCCDCFFEFFCDGFDDEEEFCEFEFEEEEEFFCDFEFDEFEEEEEEEEEFEEEEEEAEFEEFDEEC--- Structure 3: --CCCCCCCCCDEECCECCCCGCDCCCCCCCCDGEFCCEEFCEEEEEEEFCCCCCCCCDCEFEFFCDGFDDEEEEEEEEFEEEEEFFCDFEFDEFEEEEEEEEEFEEEEEEAEFEEFDEECE-- Structure 4: ---CCCCCCCCDEECCECECCGBDCCCCCCCFCGCDCCEEFCEEEEEEEFCCCCCCCCDCEFEFFCDGFDDEEEFCEFEFEEEEEFFCCFEFDEFEEEEEEEEEFEEEEEEAEFEEFDEECEE- Resulted: CCCCCCCCCCCDEECCECECCGCDCCCCCCCCDGEDCCEEFCEEEEEEEFCCCCCCCCDCEFEFFCDGFDDEEEFCEFEFEEEEEFFCDFEFDEFEEEEEEEEEFEEEEEEAEFEEFDEECEEC Native: -FFCCCCCCCCDEECCECEFCECCCCCCCCCCDGDDCCEEFCEEEEEEEFCCCCCCCCDCFFEFFCDGFDDEEEFCEFEFEEEEEFFCDFEFDEFEEEEEEEEEFEEEEEEAEFEEFDEECGE-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 4PTI.fasta Number of residues : 58 4x4 library : library2003 SPI : 95.0 Sequence: RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA Ellipse-derived structures Structure 1: CCCCCDFFFECGCFDFEEFEEEEECCCGEEEFEEECGEGFFCEEECECCCCCCCCF-- Structure 2: -FCCCDFFFECGCFDFEEFEEEEECCCGEEEFEEECGEGFFCEEECECCCCCCCEBE- Structure 3: --CCCCFFFECGCFDFEEFEEEEECCCGEEEFEEECGECCCCEEECECCCCCCCFGFE Structure 4: ---CCDFFFECGCFDCEEEEEEEECCCGEEEFEEECGEGFFCEEECECCCCCCCD--- Resulted: CFCCCDFFFECGCFDFEEFEEEEECCCGEEEFEEECGECCCCEEECECCCCCCCEBEE Native: -FCCCDFFFECGCFDFEEFEEEEECCCGEEEFEEFCGEGFECEEECECCCCCCCDCG-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 2EQL.fasta Number of residues : 129 4x4 library : library2003 SPI : 79.2 Sequence: KVFSKCELAHKLKAQEMDGFGGYSLANWVCMAEYESNFNTRAFNGKNANGSSDYGLFQLNNKWWCKDNKRSSSNACNIMCSKLLDENIDDDISCAKRVVRDPKGMSAWKAWVKHCKDKDLSEYLASCNL Ellipse-derived structures Structure 1: CCCCCCCCCCCCCCCCCFGFEEEACCCCEEFCCCCDGGECCCFFCCCCEADBCDGFCDEDCCCCECCECCFEECCEGEFCCCCCCCCECCCCCCCCCCCCECEFCCCCCCCCCDCFCCCCEDFCGEEE- Structure 2: -CCCCCCCCCCCCCCCCDGEFGEFCFDEECCCCEECGFEEEEFGGCCCCGFFCCCCCCCCCCCCEECECCCDCCCCCEEEFCCCCCDEECCCCCCCCCCCFFFGCECGECCCCDECCCCCCCCCCCFEC Structure 3: --FECCCCCCCCCCEFFEEFGGCCCCCCCCCCCCCDGGECDFDGGFEFGGCCCDCCCCCCDGCCEEECDECECDFCDDFCCCCCCCGCCCFEFCCCCCCCFCECEEEEEEEEEEGFCECEEECCCC--- Structure 4: ---GFECCCCDCCCCCCCDCCCCFCCCCCCCCCCCDGGECCCECCCCFEADCCCCCCCCCDGFCEECCCCCEDFFDGEFEDDFFBCDEECECCCCCCCCCFCCCCCCECCCCCCCEBCDCCCDCCCF-- Resulted: CCCCCCCCCCCCCCCCCEGCEGEFCCCCCCCCCCCDGGECDFFGCCCCEADCCDCCCCCCDGCCECCECCCECCCEGEEECCCCCCDECCCCCCCCCCCCFCECCCCEEECCCDCCCCCCEDCCCCFEC Native: -EFFCCCCCCCCCCDGCCDFGGEFCCCCCCCCCCCDGGECDFEEEEECEDFEEEACDGEFCCCCEECCEBEECECCGEFCCCDDFCFDCCCCCCCCCCCDFCCADCCECCCCCDCFGFEDCDCDCDEE-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 3HHB.fasta Number of residues : 142 4x4 library : library2003 SPI : 99.2 Sequence: VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYRR Ellipse-derived structures Structure 1: EBEFCCCCCCCCCCCCCACDCCCCCCCCCCCCCCCECCCCCCECDEEDFFGFCCCCCCCCCCCCCCCCCCCDCDDCCCCDCCCCCCCCCCCGFFCCCCCCCCCCCCCCCCCCECCCEFCCCCCCCCCCCCCCCCCCDCDC-- Structure 2: -EFCCCCCCCCCCCCCCACDCCCCCCCCCCCCCCCECCCCCCECDEEDFFGFCCCCCCCCCCCCCCCCCCCDCDDCCCCDCCCCCCCCCCCGFFCCCCCCCCCCCCCCCCCCECCCEFCCCCCCCCCCCCCCCCCCDEEEC- Structure 3: --FCCCCCCCCCCCCCCACDCCCCCCCCCCCCCCCECCCCCCECDEEDFFGFCCCCCCCCCCCCCCCCCCCDCCDCCCCDCCCCCCCCCCCGFFCCCCCCCCCCCCCCCCCCECCCEFCCCCCCCCCCCCCCCCCCDCCCCC Structure 4: ---CCCCCCCCCCCCCCACDCCCCCCCCCCCCCCCECCCCCCECDEEDFFGFCCCCCCCCCCCCCCCCCCCDCDDCCCCCCCCCCCCCCCCGFFCCCCCCCCCCCCCCCCCCECCCEFCCCCCCCCCCCCCCCCCCDCD--- Resulted: EEFCCCCCCCCCCCCCCACDCCCCCCCCCCCCCCCECCCCCCECDEEDFFGFCCCCCCCCCCCCCCCCCCCDCDDCCCCDCCCCCCCCCCCGFFCCCCCCCCCCCCCCCCCCECCCEFCCCCCCCCCCCCCCCCCCDCDCCC Native: -EFCCCCCCCCCCCCCCACDCCCCCCCCCCCCCCCECCCCCDECDEEDFFGFCCCCCCCCCCCCCCCCCCCDCCDCCCCDCCCCCCCCDCCGFFCCCCCCCCCCCCCCCCCDECCCEFCCCCCCCCCCCCCCCCCCDCDC-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 1NEB.fasta Number of residues : 60 4x4 library : library2003 SPI : 77.8 Sequence: TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI Ellipse-derived structures Structure 1: CFGECCCCECDGCCCCCCCCEEEECCCCFECCCCCCCECEFEEECCGECCCCCEDECCCC Structure 2: -CCCCCCCCEFEFCCCCCCCCDCDGCEEEECCCCCCAEEEAEEEECCCCCDEECCCC--- Structure 3: --CCCCCCCCCCCCEECDEEEECDGDCCCCCCCCEDGDCDGECCCCGCDGCCCCCCCC-- Structure 4: ---CCCCEFACCCCCCCDEEEDCECCCEEEDCCCCGCECEEEECCCGEFACFFFGCCCC- Resulted: CFCCCCCCFACCCCCCCDCCEDCDGCCCEECCCCCCADCEFEEECCGECCCCCCDCCCCC Native: -EDFEEEEDEEFEFCCDCCCEEFFGFEEEECCECCEGGCEEEFDCCGEEGFEFCDCEEF-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 1H7M.fasta Number of residues : 99 4x4 library : library2003 SPI : 80.6 Sequence: GSVDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRILALG Ellipse-derived structures Structure 1: GECCEEEECCCCEEFGEEEEGFCEEEEEEEEACCCCEEEECDCCCCCCCCCCCCCCCCCCFEEEDFGCEEEECCCCFFFEEDDCCCCCFCCCCCCC--- Structure 2: -CEEDCCCCCCCCCCGCEEFGCCCCCCCCCDGGCCCCCCCCCDFFCCCCECCCCCCCFGEFCEEEDAEECCCCCCCCEFEACCCCEEEEFGFDCCCC-- Structure 3: --CCCCEEBFCCCCCGEEEFCCCCCCCCCCCCCCEEEECCCCFFCDFECCCCCCCCCCGEFECCCCGEEECCCCCCCCEEEFCCCCEEEFGFFCCCCC- Structure 4: ---CCCCCCCCCCCCGEEEDGFEFFEFCCCCDGFCCCCCCCCCEFCECCCCCCCCEEEAEFEECCGGDECCCCCCCGEFDEEECCCCEFCCCCCCCCCG Resulted: GECCCCCCCCCCCCCGEEEFGCCCCCCCCCCDCCCCEEEECCCCCCCCCCCCCCCCCCAEFEECCDGEECCCCCCCCCFEECCCCCCEECCCCCCCCCG Native: -FGECCCCCCCCCCDCEEEEGCCCCCCCCCCGDECEEEEFCDFFCCCCCCCCCCCCCCGEFEEEFEEFCCCCCCCDGECEFECEEEECECACFDCCCC-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 1KOY.fasta Number of residues : 62 4x4 library : library2003 SPI : 89.0 Sequence: SHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT Ellipse-derived structures Structure 1: EEEECCCCCCCCCCCCEECFCCCCCCCCECCCCCCCCDFDCCCCCCCCCCCCCCCCEEEE-- Structure 2: -CCCCCCCCEEFFCCCCFCCCCCCCECCCFFCECCCCEDCCFCCCFCCCCCCCCCCCCCCC- Structure 3: --CCCCCCCCEFFECCCCFCCCCCCCCCEFCCCCEEEECFCCCCCCCCCCCCCCCCCCCCCC Structure 4: ---CCCCCCCCFFEEEEEECCCCCCCCCECCCCCCGFEEECCCCCCCCCCCCCCCCCCC--- Resulted: ECCCCCCCCCCFFCCCCEECCCCCCCCCEFCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC Native: -CCCCCCCCEEEDCCCFBCCCCCCCCDEFCCCCCCCDFCFCCCCCCCCCCCCCCCCCCCCC-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 1M2E.fasta Number of residues : 135 4x4 library : library2003 SPI : 82.7 Sequence: MLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFLRLAPVETMA Ellipse-derived structures Structure 1: CCCCCCCCCCCCCCCCFEGFCCCCFCDGCCCCEEGCGEFFCCCCCCCCCCCCCCCCCCCCCCDFCCCCCCCCDAEEEFEECCADCCCCECCCCCCCCCDECCCCCDGCCCCCGEFECECECCCCCCCCFFCC--- Structure 2: -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCFFFGCCCCCCCCDEEFCFCEEEEECGECFEEEAGCGCCCCGEEECCCCFGFECECCFGEFCCCDCCCCEEEECCCCCCCCEFFECCCCCCCCCCCCFCCD-- Structure 3: --CCCCEEEEEEDCCCCCCCCCCDCCDFEEEEECCDGEFEEECCCCDCCCCCDGEEEECGFFCCCCCCCDDDEGEEEFEEEEGFCCDFEDCFEBCCCCEFCDEEEEGEEECCCCCDFECCCCCCCCCCCCCCCC- Structure 4: ---CCCCEEEECFDCCCCCCCCCEFCDCCCCCCCCECCDCCCCCCCCCCCCCCCCCCCCECCCEEEECCCCCCCCCCCCEEEGGFCECECDEFCCCCCCEFCDCCCCCCCCCDCCEEEFCCCCCCCCCCCCCCCC Resulted: CCCCCCCCCCEECCCCCCCCCCCCCCDCCCCCECCDGEFCCCCCCCCCCCCCDGECCCCECCCEEEECCDCCCGEEEFEEEEGFECECECCCFCCCCCCECEEEEECCCCCCCCCDFCCCCCCCCCCCCCCCCCC Native: -CAEEEEEEEECECCCCCCCCCCEDFCDEEEEEECCCCCCCCCCCDDCCCFCEEEEECCFCDCCCCCCCCCCCGEEEFEEEEGEEDFDFCCEEEBCCCCFCCFEEEFCDDFGCCCCCCCCCCCCCCCCFFFEEC-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 1NYN.fasta Number of residues : 111 4x4 library : library2003 SPI : 73.4 Sequence: MSTVTKYFYKGENTDLIVFAASEELVDEYLKNPSIGKLSEVVELFEVFTPQDGRGAEGELGAASKAQVENEFGKGKKIEEVIDLILRNGKPNSTTSSLKTKGGNAGTKAYN Ellipse-derived structures Structure 1: DCGCFCEEEGGECCCCEEEEFFCCCCCCCCCCFEEACCCCEEEECCCCFCCCADAECCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCEGEFCCCCCCCCDDCGECGEE--- Structure 2: -EGEEEEFFFGFECCCCEEEECCCCCCDCCCECEEAGCCCCCCCCEEEEFCDGDGFCEEEECCCGCCCCGEEFFGFECCCCCCCCEEGGFFGFECCCEEEDFGCCCCCC-- Structure 3: --EEEEDCCCCCDECCCCCCCCCCCCCCCCCECCCCCCCCCCCCCCCCECCDGFACCCCCGFCCCCEFCECCCCGEFECCCCDEEECDGFCDEECCCGCEFGGGCAEEEE- Structure 4: ---CCCCDCGAEFGCEEEECCCCCCCCCCCCFFEEGEEEEEEEEEFECEFEEGEGCCCCCCCCCCCCEECCDGCDCEEECCCCCCCCGGEFECCCCCCCFEGFAGDGCCCE Resulted: DCGCECDCCGGECCCCEEEECCCCCCCCCCCCCEEGECCCEEECCCECECCCGDGFCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCEGEFCCECCCGCEFGGGCAEECCE Native: -GEFEEEFEFBCCFEEEEEECECCCCCCCCCEFECCCCCCCECEEEEEEBFEAEGCCBEFCEEFCCCCCCCEDCDBCCCCCCCCCCBEBEFECEEFCCBCBGGCEGCDCE-
############################################################# # # # Department of Bioinformatics and Telemedicine # # Collegium Medicum, Jagiellonian University # # www.modelowanie.cm-uj.krakow.pl # # # ############################################################# Sequence file : 1O13.fasta Number of residues : 105 4x4 library : library2003 SPI : 78.4 Sequence: IIAIPVSENRGKDSPISEHFGRAPYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIAAFEAGVKVIKGASGTVEEVVNQYLSGQ Ellipse-derived structures Structure 1: CCCCFCCCDCGEGAGAEFEEGEFFEEEEEEEECDFFEEEECCCCCCCCDGEEGFEFCCCCCDGFCCCCCCCCCCCCCCCCCCGEEFEEGEFAECCCCCCCCCCC- Structure 2: -EEEFDFCDCCCCFCEFCCDBEFFEEEEECCCGCCCCEDFEEEECCCDGGEEGEECCCCCCCCCCEEEEEACCCCCCCCCCCCCCEEEGEEEECCCCCCCCEEAD Structure 3: --GEFEFCDGGEEFFCCCCCCCFFEECCCCEEGGCCCCDFEECECCEEEECCCCCCCCCCCCCCCCEEEEFDGCCCCCCCCCEEEECCCCCCCCCCCCCCCC--- Structure 4: ---EECCDFGGEFEFCCCCCCCCCCDCEEEEEFCECCCCFCCCECCDFFGEDAFECCCCCCDGCCCCECEEFGEECCCCCCCCEEEECCFDGECCCCCCCCCC-- Resulted: CCCCFCFCDGGEEFGACCCCCEFFEECCECEEGCCCCCCFCCCECCCCGECCCFECCCCCCDCCCCCECCCCGCCCCCCCCCCEEEEEGEEEECCCCCCCCEEAD Native: -EEEFECEEDACDFFFFCECCDFCEEEEEFEEGGEFCEEEEEFECDCFFGEEGGCCCCCCCDGFCEEEECEEFCCCCCCCCFGEFEEEGFEAFCCCCCCCCCDG-