| |
|
|
|
|
|
|
|
|
| Table 3: Common genes expressed amongst related
microarray gene expression studies |
|
|
|
|
|
|
|
|
|
| Table
3a: Genes commonly expressed after Interferon alpha stimulation and
associated with SLE |
|
|
|
|
|
| GenBank Acc id |
Gene description |
HUGO id |
Baechler et al 2003 |
Der et al 1998 |
|
|
| NM_003733 |
2'-5'-oligoadenylate synthetase-like |
OAS1 |
7.9 |
2.7 |
|
|
| NM_001025107
|
adenosine deaminase, RNA-specific |
ADAR |
2.8 |
2.1 |
|
|
| NM_000043 |
Fas (TNF receptor superfamily, member 6) |
FAS |
5.8 |
2.4 |
|
|
| NM_002053 |
guanylate binding protein 1, interferon-inducible, 67kDa |
GBP1 |
7.5 |
4.1 |
|
|
| NM_002199 |
interferon regulatory factor 2 |
IRF2 |
3.3 |
2.5 |
|
|
| NM_005101 |
interferon, alpha-inducible protein (clone IFI-15K) |
G1P2 |
24 |
20.7 |
|
|
| NM_002038 |
interferon, alpha-inducible protein (clone IFI-6-16) |
G1P3 |
10.9 |
20.2 |
|
|
| NM_005531 |
interferon, gamma-inducible protein 16 |
IFI16 |
3.7 |
4.9 |
|
|
| NM_005533 |
interferon-induced protein 35 |
IFI35 |
29.4 |
8.4 |
|
|
| NM_006417 |
interferon-induced protein 44 |
IFI44 |
17 |
2.8 |
|
|
| NM_001001887
|
interferon-induced protein with tetratricopeptide repeats 1 |
IFIT1 |
2.7 |
29.4 |
|
|
| NM_001547 |
interferon-induced protein with tetratricopeptide repeats 2 |
IFIT2 |
53 |
1 |
|
|
| NM_006084 |
interferon-stimulated transcription factor 3, gamma 48kDa |
ISGF3G |
2.7 |
10.1 |
|
|
| NM_000600 |
interleukin 6 (interferon, beta 2) |
IL6 |
6.1 |
3.6 |
|
|
| NM_002462 |
myxovirus (influenza virus) resistance 1, interferon-inducible
protein p78 (mouse) |
MX1 |
21.1 |
21.3 |
|
|
| NM_002463 |
myxovirus (influenza virus) resistance 2 (mouse) |
MX2 |
14.4 |
5.7 |
|
|
| NM_021127 |
phorbol-12-myristate-13-acetate-induced protein 1 |
PMAIP1 |
4.2 |
1.4 |
|
|
| NM_021105 |
phospholipid scramblase 1 |
PLSCR1 |
7.7 |
8.2 |
|
|
| NM_002675 |
promyelocytic leukemia |
PML |
4.8 |
4 |
|
|
| NM_007315 |
signal transducer and activator of transcription 1, 91kDa |
STAT1 |
8.4 |
5.6 |
|
|
| NM_000593 |
transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) |
TAP1 |
4.2 |
28 |
|
|
| NM_006074 |
tripartite motif-containing 22 |
TRIM22 |
7.5 |
3.9 |
|
|
| NM_004335 |
bone marrow stromal cell antigen 2 |
BST2 |
5.8 |
3.9 |
|
|
| NM_006016 |
CD164 antigen, sialomucin |
CD164 |
2.5 |
1.7 |
|
|
| NM_006877 |
guanosine monophosphate reductase |
GMPR |
2.6 |
3.4 |
|
|
| XM_496088 |
hypothetical protein LOC161527 |
LOC161527 |
3.9 |
4 |
|
|
| NM_005931 |
MHC class I polypeptide-related sequence B |
MICB |
3.4 |
3 |
|
|
| NM_004688 |
N-myc (and STAT) interactor |
NMI |
4.2 |
3 |
|
|
| NM_004159 |
proteasome (prosome, macropain) subunit, beta type, 8 (large
multifunctional protease 7) |
PSMB8 |
2.8 |
8.3 |
|
|
| NM_002800 |
proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional protease 2) |
PSMB9 |
2.7 |
3.6 |
|
|
| NM_004509 |
SP110 nuclear body protein |
SP110 |
4.4 |
7.8 |
|
|
| NM_014788 |
tripartite motif-containing 14 |
TRIM14 |
3.8 |
4.7 |
|
|
| NM_003141 |
tripartite motif-containing 21 |
TRIM21 |
4.5 |
10.2 |
|
|
| NM_003449 |
tripartite motif-containing 26 |
TRIM26 |
2.7 |
2.6 |
|
|
| |
|
|
|
| Table
3b: Gene expression common to dermatomyositis related studies |
|
|
|
|
| GenBank Acc id |
Gene description |
HUGO id |
Tezak et al 2002 |
Greenberg et al 2005 |
|
|
| NM_001572 |
Interferon regulatory factor 7 |
IRF7 |
31.1 |
7.1 |
|
| NM_002462 |
Mx1; myxovirus resistance 1 |
MXA |
96.41 |
13.6 |
|
| NM_002463 |
Mx2; Myxovirus resistance 2 |
MXB |
10.2 |
4.4 |
|
| NM_005532 |
IFI27 interferon, -inducible
protein 27 |
IFI27 |
22.5 |
9.5 |
|
| NM_006820 |
GS3686; homology to
interferon-induced p44 |
IFI44 |
15.5 |
11.9 |
|
| |
|
|
|
|
| Table 3c: Genes
commonly expressed following the induction of T cell anergy |
|
|
|
|
| GenBank Acc id |
Gene description |
HUGO id |
Anderson et al 2006 |
Safford et al 2005 |
|
|
| NM_008054 |
Fyn proto-oncogene |
fyn |
1.493 |
0.826 |
|
|
| NM_008479 |
lymphocyte-activation gene 3 |
lag3 |
1.829 |
1.46 |
|
|
| NM_008655 |
growth arrest and DNA-damage-inducible 45 beta |
gadd45b |
1.961 |
1.432 |
|
|
| NM_009404 |
tumor necrosis factor (ligand) superfamily, member 9 |
tnfsf9 |
1.497 |
1.473 |
|
|
| NM_010118 |
early growth response 2 |
egr2 |
4.645 |
1.413 |
|
|
| NM_010602 |
potassium inwardly rectifying channel, subfamily J, member 11 |
kcnj11 |
1.462 |
0.826 |
|
|
| NM_011312 |
S100 calcium binding protein A5 |
s100a5 |
1.656 |
0.993 |
|
|
| NM_011329 |
chemokine (C-C motif) ligand 1 |
ccl1 |
1.984 |
2.000 |
|
|
| NM_011613 |
tumor necrosis factor (ligand) superfamily, member 11 |
tnfsf11 |
1.855 |
1.936 |
|
|
| NM_011659 |
tumor necrosis factor receptor superfamily, member 4 |
tnfrsf4 |
2.618 |
1.275 |
|
|
| NM_012033 |
tubulointerstitial nephritis antigen |
Tinag |
1.74 |
1.09 |
|
|
| NM_013674 |
interferon regulatory factor 4 |
irf4 |
4.884 |
1.409 |
|
|
| NM_016687 |
secreted frizzled-related sequence protein 4 |
sfrp4 |
1.966 |
1.314 |
|
|
| NM_016791 |
nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 1 |
nfatc1 |
3.115 |
1.348 |
|
|
| NM_019703 |
phosphofructokinase, platelet |
pfkp |
1.976 |
1.124 |
|
|
| NM_019948 |
C-type lectin domain family 4, member e |
clec4e |
2.485 |
1.071 |
|
|
| NM_021878 |
jumonji, AT rich interactive domain 2 |
Jarid2 |
1.632 |
0.878 |
|
|
|
|
|
|
| Table 3d: Common
gene expression following the comparison of entire microarray gene sets
investigating T cell tolerance |
|
| GenBank Acc id |
Gene description |
HUGO id |
Anderson et al 2006 |
Safford et al 2005 |
|
| NM_007390 |
cholinergic receptor, nicotinic, alpha polypeptide 7 (Chrna7),
mRNA |
Chrna7 |
1.495 |
1.061 |
|
| NM_007399 |
a disintegrin and metallopeptidase domain 10 (Adam10), mRNA |
Adam10 |
1.446 |
1.808 |
|
| NM_007402 |
a disintegrin and metallopeptidase domain 7 (Adam7), mRNA |
Adam7 |
2.352 |
1.082 |
|
| NM_007434 |
ADP-ribosylation factor 6 (Arf6), mRNA |
Akt2 |
2.356 |
1.954 |
|
| NM_007478 |
ADP-ribosylation factor 3 (Arf3), mRNA |
Arf3 |
1.557 |
1.344 |
|
| NM_007481 |
thymoma viral proto-oncogene 2 (Akt2), mRNA |
Arf6 |
1.95 |
1.954 |
|
| NM_007488 |
aryl hydrocarbon receptor nuclear translocator 2 (Arnt2), mRNA |
Arnt2 |
2.218 |
1.054 |
|
| NM_007495 |
astrotactin 1 (Astn1), mRNA |
Astn1 |
1.897 |
1.65 |
|
| NM_007535 |
B-cell leukemia |
Bcl2a1a |
2.626 |
1.001 |
|
| NM_007573 |
complement component 1, q subcomponent binding protein
(C1qbp), mRNA |
C1qbp |
1.729 |
0.863 |
|
| NM_007603 |
calpain 6 (Capn6), mRNA |
Capn6 |
1.655 |
0.959 |
|
| NM_007609 |
caspase 4, apoptosis-related cysteine peptidase (Casp4), mRNA |
Casp4 |
4.048 |
1.332 |
|
| NM_007662 |
cadherin 15 (Cdh15), mRNA |
Cdh15 |
1.536 |
1.618 |
|
| NM_007669 |
cyclin-dependent kinase inhibitor 1A (P21) (Cdkn1a), mRNA |
Cdkn1a |
1.527 |
2.262 |
|
| NM_007670 |
cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)
(Cdkn2b), mRNA |
Cdkn2b |
1.804 |
1.617 |
|
| NM_007682 |
desmocollin 3 (Dsc3), mRNA |
Cenpb |
1.854 |
1.163 |
|
| NM_007685 |
cripto, FRL-1, cryptic family 1 (Cfc1), mRNA |
Cfc1 |
1.447 |
2.368 |
|
| NM_007746 |
mitogen activated protein kinase kinase kinase 8 (Map3k8),
mRNA |
Map3k8 |
2.61 |
3.944 |
|
| NM_007784 |
prostaglandin E receptor 2 (subtype EP2) (Ptger2), mRNA |
Csna |
2.495 |
1.766 |
|
| NM_007809 |
cytochrome P450, family 17, subfamily a, polypeptide 1
(Cyp17a1), mRNA |
Cyp17a1 |
1.622 |
0.479 |
|
| NM_007824 |
cytochrome P450, family 7, subfamily a, polypeptide 1
(Cyp7a1), mRNA |
Cyp7a1 |
1.76 |
1.128 |
|
| NM_007882 |
centromere protein B (Cenpb), mRNA |
Dsc3 |
1.557 |
1.163 |
|
| NM_007913 |
early growth response 1 (Egr1), mRNA |
Egr1 |
2.348 |
0.624 |
|
| NM_007930 |
ectodermal-neural cortex 1 (Enc1), mRNA |
Enc1 |
1.644 |
3.901 |
|
| NM_007955 |
protein tyrosine phosphatase, receptor type, V (Ptprv), mRNA |
Ptprv |
1.738 |
2.841 |
|
| NM_007972 |
coagulation factor X (F10), mRNA |
|
1.794 |
1.962 |
|
| NM_007982 |
PTK2 protein tyrosine kinase 2 (Ptk2), mRNA |
Ptk2 |
1.505 |
1.275 |
|
| NM_008036 |
FBJ osteosarcoma oncogene B (Fosb), mRNA |
Fosb |
1.665 |
1.887 |
|
| NM_008054 |
LIM and SH3 protein 1 (Lasp1), mRNA |
Fyn |
1.493 |
1.424 |
|
| NM_008065 |
GA repeat binding protein, alpha (Gabpa), mRNA |
Gabpa |
1.746 |
0.608 |
|
| NM_008088 |
methylenetetrahydrofolate dehydrogenase (NAD+ dependent),
methenyltetrahydrofolate cyclohydrolase (Mthfd2),
mRNA |
Gas7 |
1.473 |
1.208 |
|
| NM_008089 |
GATA binding protein 1 (Gata1), mRNA |
Gata1 |
1.656 |
2.071 |
|
| NM_008103 |
neuropeptide Y receptor Y5 (Npy5r), mRNA |
Gcm1 |
1.928 |
1.241 |
|
| NM_008126 |
gap junction membrane channel protein beta 3 (Gjb3), mRNA |
Gjb3 |
1.545 |
1.555 |
|
| NM_008140 |
guanine nucleotide binding protein, alpha transducing 1
(Gnat1), mRNA |
Gnat1 |
1.464 |
1.434 |
|
| NM_008152 |
G-protein coupled receptor 65 (Gpr65), mRNA |
Gpr65 |
2.039 |
2.825 |
|
| NM_008156 |
glycosylphosphatidylinositol specific phospholipase D1
(Gpld1), mRNA |
Gpld1 |
2.155 |
0.925 |
|
| NM_008177 |
gastrin releasing peptide receptor (Grpr), mRNA |
Grpr |
1.886 |
1.858 |
|
| NM_008222 |
holocytochrome c synthetase (Hccs), mRNA |
Hccs |
1.492 |
2.294 |
|
| NM_008224 |
host cell factor C1 (Hcfc1), mRNA |
Hcfc1 |
2.188 |
0.589 |
|
| NM_008319 |
intercellular adhesion molecule 5, telencephalin (Icam5), mRNA |
Icam5 |
1.776 |
2.6 |
|
| NM_008320 |
interferon regulatory factor 8 (Irf8), mRNA |
Irf8 |
3.725 |
3.248 |
|
| NM_008324 |
indoleamine-pyrrole 2,3 dioxygenase (Indo), mRNA |
Indo |
1.587 |
1.121 |
|
| NM_008333 |
interferon alpha family, gene 11 (Ifna11), mRNA |
Ifna11 |
1.982 |
0.199 |
|
| NM_008341 |
insulin-like growth factor binding protein 1 (Igfbp1), mRNA |
Igfbp1 |
2.899 |
2.314 |
|
| NM_008353 |
interleukin 12 receptor, beta 1 (Il12rb1), mRNA |
Il12rb1 |
1.598 |
1.335 |
|
| NM_008355 |
interleukin 13 (Il13), mRNA |
Il13 |
1.832 |
6.581 |
|
| NM_008366 |
serine peptidase inhibitor, Kazal type 3 (Spink3), mRNA |
Il2 |
3.147 |
1 |
|
| NM_008371 |
regulator of G protein signaling 7 (Rgs7), mRNA |
Il7 |
1.497 |
2 |
|
| NM_008387 |
insulin II (Ins2), mRNA |
Ins2 |
1.507 |
0.459 |
|
| NM_008401 |
integrin alpha M (Itgam), mRNA |
Itgam |
1.45 |
2.172 |
|
| NM_008402 |
integrin alpha V (Itgav), mRNA |
Itgav |
1.474 |
0.647 |
|
| NM_008413 |
Janus kinase 2 (Jak2), mRNA |
Jak2 |
2.751 |
1.802 |
|
| NM_008416 |
Jun-B oncogene (Junb), mRNA |
Junb |
1.825 |
2.844 |
|
| NM_008420 |
potassium voltage gated channel, Shab-related subfamily,
member 1 (Kcnb1), mRNA |
Kcnb1 |
1.717 |
1.17 |
|
| NM_008426 |
potassium inwardly-rectifying channel, subfamily J, member 3
(Kcnj3), mRNA |
Kcnj3 |
2.071 |
1.761 |
|
| NM_008439 |
ketohexokinase (Khk), mRNA |
Khk |
1.891 |
1.447 |
|
| NM_008479 |
lymphocyte-activation gene 3 (Lag3), mRNA |
Lag3 |
1.829 |
3.118 |
|
| NM_008510 |
chemokine (C motif) ligand 1 (Xcl1), mRNA |
Xcl1 |
1.663 |
8.024 |
|
| NM_008521 |
leukotriene C4 synthase (Ltc4s), mRNA |
Ltc4s |
1.515 |
0.575 |
|
| NM_008560 |
melanocortin 2 receptor (Mc2r), mRNA |
Mc2r |
2.229 |
1.095 |
|
| NM_008567 |
minichromosome maintenance deficient 6 (MIS5 homolog, S.
pombe) (S. cerevisiae) (Mcm6), mRNA |
Mcm6 |
2.059 |
1.117 |
|
| NM_008634 |
parathyroid hormone (Pth), mRNA |
Mtap1b |
1.543 |
1.17 |
|
| NM_008638 |
growth arrest specific 7 (Gas7), mRNA |
Mthfd2 |
1.795 |
1.208 |
|
| NM_008655 |
growth arrest and DNA-damage-inducible 45 beta (Gadd45b), mRNA |
Gadd45b |
1.961 |
3.025 |
|
| NM_008686 |
nuclear factor, erythroid derived 2,-like 1 (Nfe2l1), mRNA |
Nfe2l1 |
1.61 |
0.669 |
|
| NM_008687 |
nuclear factor I |
Nfib |
1.897 |
1.06 |
|
| NM_008728 |
sulfotransferase family, cytosolic, 2B, member 1 (Sult2b1),
mRNA |
Npr3 |
1.863 |
2.143 |
|
| NM_008817 |
paternally expressed 3 (Peg3), mRNA |
Peg3 |
1.855 |
0.76 |
|
| NM_008831 |
prohibitin (Phb), mRNA |
Phb |
1.787 |
2.244 |
|
| NM_008833 |
per-hexamer repeat gene 2 (Phxr2), mRNA |
Phxr2 |
1.656 |
1.69 |
|
| NM_008856 |
protein kinase C, eta (Prkch), mRNA |
Prkch |
1.692 |
2.587 |
|
| NM_008857 |
protein kinase C, iota (Prkci), mRNA |
Prkci |
2.149 |
1.493 |
|
| NM_008871 |
serine (or cysteine) peptidase inhibitor, clade E, member 1
(Serpine1), mRNA |
Serpine1 |
2.963 |
2.433 |
|
| NM_008874 |
phospholipase C, beta 3 (Plcb3), mRNA |
Plcb3 |
1.674 |
1.394 |
|
| NM_008895 |
pro-opiomelanocortin-alpha (Pomc1), mRNA |
Pomc1 |
1.73 |
1.007 |
|
| NM_008937 |
eyes absent 4 homolog (Drosophila) (Eya4), mRNA |
Prox1 |
1.561 |
1.322 |
|
| NM_008964 |
casein alpha (Csna), mRNA |
Ptger2 |
1.686 |
1.766 |
|
| NM_008984 |
angiopoietin-like 4 (Angptl4), mRNA |
Ptprm |
2.114 |
0.456 |
|
| NM_008996 |
RAB1, member RAS oncogene family (Rab1), mRNA |
Rab1 |
1.92 |
1.994 |
|
| NM_008998 |
RAB17, member RAS oncogene family (Rab17), mRNA |
Rab17 |
1.476 |
1.153 |
|
| NM_009004 |
kinesin family member 20A (Kif20a), mRNA |
Kif20a |
2.656 |
0.242 |
|
| NM_009027 |
RAS protein-specific guanine nucleotide-releasing factor 2
(Rasgrf2), mRNA |
Rasgrf2 |
2.227 |
1.087 |
|
| NM_009044 |
reticuloendotheliosis oncogene (Rel), mRNA |
Rel |
2.26 |
1.842 |
|
| NM_009063 |
regulator of G-protein signaling 5 (Rgs5), mRNA |
Rgs5 |
1.653 |
1.393 |
|
| NM_009130 |
fibulin 1 (Fbln1), mRNA |
Scg3 |
1.691 |
0.896 |
|
| NM_009168 |
src homology 2 domain-containing transforming protein D (Shd),
mRNA |
Shd |
1.505 |
1.645 |
|
| NM_009182 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
(St8sia3), mRNA |
St8sia3 |
2.023 |
1.657 |
|
| NM_009196 |
solute carrier family 16 (monocarboxylic acid transporters),
member 1 (Slc16a1), mRNA |
Slc16a1 |
2.671 |
2.824 |
|
| NM_009199 |
solute carrier family 1 (neuronal |
Slc1a1 |
1.631 |
0.599 |
|
| NM_009200 |
solute carrier family 1 (high affinity aspartate |
Slc1a6 |
2.311 |
1.215 |
|
| NM_009255 |
serine (or cysteine) peptidase inhibitor, clade E, member 2
(Serpine2), mRNA |
Serpine2 |
2.334 |
1.325 |
|
| NM_009258 |
interleukin 2 (Il2), mRNA |
Spink3 |
1.733 |
1 |
|
| NM_009313 |
tachykinin receptor 1 (Tacr1), mRNA |
Tacr1 |
1.559 |
1.239 |
|
| NM_009320 |
solute carrier family 6 (neurotransmitter transporter,
taurine), member 6 (Slc6a6), mRNA |
Slc6a6 |
1.452 |
0.203 |
|
| NM_009346 |
TEA domain family member 1 (Tead1), mRNA |
Tead1 |
2.429 |
1.36 |
|
| NM_009350 |
testis nuclear RNA binding protein (Tenr), mRNA |
Tenr |
1.865 |
0.172 |
|
| NM_009363 |
trefoil factor 2 (spasmolytic protein 1) (Tff2), mRNA |
Tff2 |
2.505 |
1.28 |
|
| NM_009381 |
thyroid hormone responsive SPOT14 homolog (Rattus) (Thrsp),
mRNA |
Thrsp |
2.38 |
2.914 |
|
| NM_009387 |
thymidine kinase 1 (Tk1), mRNA |
Tk1 |
1.585 |
0.272 |
|
| NM_009397 |
tumor necrosis factor, alpha-induced protein 3 (Tnfaip3), mRNA |
Tnfaip3 |
1.713 |
5.343 |
|
| NM_009404 |
tumor necrosis factor (ligand) superfamily, member 9 (Tnfsf9),
mRNA |
|
1.497 |
3.162 |
|
| NM_009411 |
trophoblast specific protein alpha (Tpbpa), mRNA |
Tpbpa |
1.49 |
2.881 |
|
| NM_009427 |
transducer of ErbB-2.1 (Tob1), mRNA |
Tob1 |
1.459 |
1.291 |
|
| NM_009472 |
unc-5 homolog C (C. elegans) (Unc5c), mRNA |
Unc5c |
1.915 |
1.343 |
|
| NM_009511 |
vasoactive intestinal peptide receptor 2 (Vipr2), mRNA |
Vipr2 |
2.144 |
1.237 |
|
| NM_009548 |
zinc finger protein 179 (Zfp179), mRNA |
Zfp179 |
1.852 |
1.833 |
|
| NM_009569 |
zinc finger protein, multitype 1 (Zfpm1), mRNA |
Zfpm1 |
2.055 |
2.448 |
|
| NM_009639 |
cysteine-rich secretory protein 3 (Crisp3), mRNA |
Crisp3 |
1.664 |
2.344 |
|
| NM_009647 |
adenylate kinase 3 alpha-like 1 (Ak3l1), mRNA |
Ak3l1 |
2.053 |
1.09 |
|
| NM_009651 |
A kinase (PRKA) anchor protein 4 (Akap4), transcript variant
1, mRNA |
Akap4 |
1.696 |
2.203 |
|
| NM_009659 |
arachidonate 12-lipoxygenase, 12R type (Alox12b), mRNA |
Alox12b |
1.482 |
3.033 |
|
| NM_009704 |
amphiregulin (Areg), mRNA |
Areg |
1.731 |
5.013 |
|
| NM_009758 |
bone morphogenetic protein receptor, type 1A (Bmpr1a), mRNA |
Bmpr1a |
1.515 |
1.322 |
|
| NM_009802 |
carbonic anhydrase 6 (Car6), mRNA |
Car6 |
1.578 |
2.426 |
|
| NM_009810 |
caspase 3 (Casp3), mRNA |
Casp3 |
1.584 |
0.7 |
|
| NM_009856 |
CD83 antigen (Cd83), mRNA |
Cd83 |
2.384 |
0.576 |
|
| NM_009895 |
cytokine inducible SH2-containing protein (Cish), mRNA |
Cish |
2.057 |
1.552 |
|
| NM_009900 |
chloride channel 2 (Clcn2), mRNA |
Clcn2 |
1.871 |
1.368 |
|
| NM_009922 |
calponin 1 (Cnn1), mRNA |
Cnn1 |
1.953 |
1.883 |
|
| NM_009933 |
procollagen, type VI, alpha 1 (Col6a1), mRNA |
Col6a1 |
2.024 |
0.905 |
|
| NM_010008 |
cytochrome P450, family 2, subfamily j, polypeptide 6
(Cyp2j6), mRNA |
Cyp2j6 |
1.934 |
2.248 |
|
| NM_010090 |
dual specificity phosphatase 2 (Dusp2), mRNA |
Dusp2 |
2.077 |
1.111 |
|
| NM_010118 |
early growth response 2 (Egr2), mRNA |
Egr2 |
4.645 |
2.961 |
|
| NM_010127 |
POU domain, class 6, transcription factor 1 (Pou6f1), mRNA |
Pou6f1 |
1.899 |
0.777 |
|
| NM_010162 |
exostoses (multiple) 1 (Ext1), mRNA |
Ext1 |
2.527 |
1.318 |
|
| NM_010167 |
prospero-related homeobox 1 (Prox1), mRNA |
Eya4 |
1.476 |
1.322 |
|
| NM_010177 |
Fas ligand (TNF superfamily, member 6) (Fasl), mRNA |
Fasl |
1.656 |
1.606 |
|
| NM_010180 |
secretogranin III (Scg3), mRNA |
Fbln1 |
2.098 |
0.896 |
|
| NM_010192 |
feminization 1 homolog a (C. elegans) (Fem1a), mRNA |
Fem1a |
2.512 |
1.42 |
|
| NM_010216 |
c-fos induced growth factor (Figf), mRNA |
Figf |
1.861 |
1.611 |
|
| NM_010275 |
glial cell line derived neurotrophic factor (Gdnf), mRNA |
Gdnf |
1.915 |
1.19 |
|
| NM_010276 |
GTP binding protein (gene overexpressed in skeletal muscle)
(Gem), mRNA |
Gem |
2.632 |
5.893 |
|
| NM_010284 |
growth hormone receptor (Ghr), mRNA |
Ghr |
1.449 |
0.536 |
|
| NM_010288 |
gap junction membrane channel protein alpha 1 (Gja1), mRNA |
Gja1 |
2.31 |
1.271 |
|
| NM_010401 |
histidine ammonia lyase (Hal), mRNA |
Hal |
1.607 |
1.513 |
|
| NM_010416 |
hematopoietic cell transcript 1 (Hemt1), mRNA |
Hemt1 |
2.496 |
1.301 |
|
| NM_010417 |
hephaestin (Heph), transcript variant 1, mRNA |
Heph |
1.711 |
1.115 |
|
| NM_010432 |
homeodomain interacting protein kinase 1 (Hipk1), mRNA |
Hipk1 |
2.839 |
3.919 |
|
| NM_010437 |
human immunodeficiency virus type I enhancer binding protein 2
(Hivep2), mRNA |
Hivep2 |
1.67 |
1.415 |
|
| NM_010441 |
high mobility group AT-hook 2 (Hmga2), mRNA |
Hmga2 |
1.511 |
1.044 |
|
| NM_010484 |
solute carrier family 6 (neurotransmitter transporter,
serotonin), member 4 (Slc6a4), mRNA |
Slc6a4 |
2.215 |
0.49 |
|
| NM_010485 |
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1
(Hu antigen R) (Elavl1), mRNA |
Elavl1 |
1.599 |
1.133 |
|
| NM_010548 |
interleukin10(Il10),mRNA |
il10 |
5.241 |
0.698 |
|
| NM_010552 |
interleukin 17A (Il17a), mRNA |
Il17a |
1.787 |
1.655 |
|
| NM_010602 |
potassium inwardly rectifying channel, subfamily J, member 11
(Kcnj11), mRNA |
Kcnj11 |
1.462 |
2.052 |
|
| NM_010603 |
potassium inwardly-rectifying channel, subfamily J, member 12
(Kcnj12), mRNA |
Kcnj12 |
2.501 |
1.482 |
|
| NM_010688 |
Fyn proto-oncogene (Fyn), mRNA |
Lasp1 |
2.274 |
1.424 |
|
| NM_010717 |
LIM-domain containing, protein kinase (Limk1), mRNA |
Limk1 |
1.929 |
1.409 |
|
| NM_010756 |
v-maf musculoaponeurotic fibrosarcoma oncogene family, protein
G (avian) (Mafg), mRNA |
Mafg |
1.507 |
0.987 |
|
| NM_010778 |
CD46 antigen, complement regulatory protein (Cd46), mRNA |
Cd46 |
2.74 |
1.78 |
|
| NM_010785 |
transformed mouse 3T3 cell double minute 1 (Mdm1), transcript
variant 1, mRNA |
Mdm1 |
1.649 |
3.163 |
|
| NM_010925 |
novel nuclear protein 1 (Nnp1), mRNA |
Nnp1 |
1.71 |
1.725 |
|
| NM_010930 |
nephroblastoma overexpressed gene (Nov), mRNA |
Nov |
2.126 |
1.524 |
|
| NM_010931 |
ubiquitin-like, containing PHD and RING finger domains, 1
(Uhrf1), mRNA |
Uhrf1 |
1.551 |
1.946 |
|
| NM_011041 |
paired box gene 9 (Pax9), mRNA |
Pax9 |
1.636 |
2.263 |
|
| NM_011058 |
platelet derived growth factor receptor, alpha polypeptide
(Pdgfra), mRNA |
Pdgfra |
1.592 |
0.391 |
|
| NM_011084 |
phosphatidylinositol 3-kinase, C2 domain containing, gamma
polypeptide (Pik3c2g), transcript variant 2, mRNA |
Pik3c2g |
1.772 |
1.546 |
|
| NM_011101 |
protein kinase C, alpha (Prkca), mRNA |
Prkca |
2.683 |
4.108 |
|
| NM_011178 |
proteinase 3 (Prtn3), mRNA |
Prtn3 |
1.764 |
1.551 |
|
| NM_011180 |
pleckstrin homology, Sec7 and coiled-coil domains 1 (Pscd1),
mRNA |
Pscd1 |
1.593 |
1.495 |
|
| NM_011198 |
prostaglandin-endoperoxide synthase 2 (Ptgs2), mRNA |
Ptgs2 |
1.54 |
2.787 |
|
| NM_011201 |
protein tyrosine phosphatase, non-receptor type 1 (Ptpn1),
mRNA |
Ptpn1 |
1.458 |
1.647 |
|
| NM_011312 |
S100 calcium binding protein A5 (S100a5), mRNA |
S100a5 |
1.656 |
1.566 |
|
| NM_011322 |
sodium channel, voltage-gated, type I, beta (Scn1b), mRNA |
Scn1b |
2.081 |
1.309 |
|
| NM_011329 |
chemokine (C-C motif) ligand 1 (Ccl1), mRNA |
Ccl1 |
1.984 |
4.912 |
|
| NM_011386 |
SKI-like (Skil), transcript variant 1, mRNA |
Skil |
1.787 |
3.081 |
|
| NM_011387 |
solute carrier family 10 (sodium |
Slc10a1 |
2.071 |
0.298 |
|
| NM_011427 |
snail homolog 1 (Drosophila) (Snai1), mRNA |
Snai1 |
2.705 |
2.057 |
|
| NM_011499 |
serine |
Strap |
1.712 |
1.193 |
|
| NM_011561 |
thymine DNA glycosylase (Tdg), transcript variant 1, mRNA |
Tdg |
1.546 |
1.221 |
|
| NM_011577 |
transforming growth factor, beta 1 (Tgfb1), mRNA |
Tgfb1 |
1.479 |
3.665 |
|
| NM_011602 |
talin 1 (Tln1), mRNA |
Tln1 |
2 |
0.194 |
|
| NM_011609 |
tumor necrosis factor receptor superfamily, member 1a
(Tnfrsf1a), mRNA |
Tnfrsf1a |
1.863 |
0.874 |
|
| NM_011613 |
tumor necrosis factor (ligand) superfamily, member 11
(Tnfsf11), mRNA |
Tnfsf11 |
1.855 |
4.698 |
|
| NM_011655 |
tubulin, beta 5 (Tubb5), mRNA |
|
1.918 |
1.894 |
|
| NM_011659 |
tumor necrosis factor receptor superfamily, member 4
(Tnfrsf4), mRNA |
Tnfrsf4 |
2.618 |
2.504 |
|
| NM_011850 |
nuclear receptor subfamily 0, group B, member 2 (Nr0b2), mRNA |
Nr0b2 |
1.587 |
1.998 |
|
| NM_011880 |
interleukin 7 (Il7), mRNA |
Rgs7 |
1.586 |
2 |
|
| NM_011893 |
SH3-domain binding protein 2 (Sh3bp2), mRNA |
Sh3bp2 |
1.913 |
0.524 |
|
| NM_011946 |
mitogen activated protein kinase kinase kinase 2 (Map3k2),
mRNA |
Map3k2 |
1.482 |
2.309 |
|
| NM_011955 |
nucleotide binding protein 1 (Nubp1), mRNA |
Nubp1 |
2.602 |
1.298 |
|
| NM_012000 |
ceroid-lipofuscinosis, neuronal 8 (Cln8), mRNA |
Cln8 |
1.802 |
1.816 |
|
| NM_012033 |
tubulointerstitialnephritisantigen(Tinag),mRNA |
Tinag |
1.74 |
1.09 |
|
| NM_013479 |
Bcl2-like 10 (Bcl2l10), mRNA |
Bcl2l10 |
1.992 |
0.736 |
|
| NM_013542 |
granzyme B (Gzmb), mRNA |
Gzmb |
5.083 |
2.151 |
|
| NM_013588 |
leucine rich repeat containing 23 (Lrrc23), mRNA |
Lrrc23 |
1.531 |
0.724 |
|
| NM_013665 |
short stature homeobox 2 (Shox2), mRNA |
Shox2 |
1.565 |
2.536 |
|
| NM_013674 |
interferon regulatory factor 4 (Irf4), mRNA |
Irf4 |
4.884 |
2.95 |
|
| NM_013766 |
prolactin-like protein J (Prlpj), mRNA |
Prlpj |
2.382 |
3.447 |
|
| NM_013820 |
hexokinase 2 (Hk2), mRNA |
Hk2 |
1.966 |
0.859 |
|
| NM_013827 |
metal response element binding transcription factor 2 (Mtf2),
mRNA |
Mtf2 |
1.674 |
0.98 |
|
| NM_015806 |
mitogen-activated protein kinase 6 (Mapk6), transcript variant
1, mRNA |
Mapk6 |
1.738 |
2.378 |
|
| NM_016674 |
claudin 1 (Cldn1), mRNA |
Cldn1 |
1.941 |
0.737 |
|
| NM_016676 |
squamous cell carcinoma antigen recognized by T-cells 1
(Sart1), mRNA |
|
1.626 |
1.118 |
|
| NM_016687 |
secreted frizzled-related sequence protein 4 (Sfrp4), mRNA |
Sfrp4 |
1.966 |
2.632 |
|
| NM_016708 |
glial cells missing homolog 1 (Drosophila) (Gcm1), mRNA |
Npy5r |
1.742 |
1.241 |
|
| NM_016762 |
matrilin 2 (Matn2), mRNA |
Matn2 |
1.577 |
1.104 |
|
| NM_016769 |
MAD homolog 3 (Drosophila) (Smad3), mRNA |
Smad3 |
1.678 |
1.203 |
|
| NM_016781 |
protein kinase, AMP-activated, gamma 1 non-catalytic subunit
(Prkag1), mRNA |
Prkag1 |
1.493 |
2.136 |
|
| NM_016791 |
nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 1 (Nfatc1), transcript variant 1, mRNA |
Nfatc1 |
3.115 |
3.836 |
|
| NM_016803 |
carbohydrate (chondroitin 6 |
Chst3 |
2.423 |
1.599 |
|
| NM_016853 |
src homology three (SH3) and cysteine rich domain (Stac), mRNA |
Stac |
1.898 |
1.614 |
|
| NM_016870 |
acyl-CoA synthetase medium-chain family member 3 (Acsm3),
transcript variant 1, mRNA |
Acsm3 |
1.519 |
2.907 |
|
| NM_016882 |
RAB10, member RAS oncogene family (Rab10), mRNA |
Sart1 |
2.018 |
1.118 |
|
| NM_016885 |
endomucin (Emcn), mRNA |
Emcn |
1.62 |
0.339 |
|
| NM_016888 |
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
(B3gnt2), mRNA |
B3gnt2 |
1.563 |
0.998 |
|
| NM_016904 |
CDC28 protein kinase 1b (Cks1b), mRNA |
Cks1b |
2.791 |
1.847 |
|
| NM_016984 |
transient receptor potential cation channel, subfamily C,
member 4 (Trpc4), mRNA |
Trpc4 |
1.886 |
1.844 |
|
| NM_017373 |
nuclear factor, interleukin 3, regulated (Nfil3), mRNA |
Nfil3 |
2.269 |
1.079 |
|
| NM_017465 |
natriuretic peptide receptor 3 (Npr3), transcript variant 1,
mRNA |
Sult2b1 |
1.459 |
2.143 |
|
| NM_018810 |
makorin, ring finger protein, 1 (Mkrn1), mRNA |
Mkrn1 |
2.563 |
1.017 |
|
| NM_018865 |
WNT1 inducible signaling pathway protein 1 (Wisp1), mRNA |
Wisp1 |
1.826 |
3.797 |
|
| NM_018868 |
nucleolar protein 5 (Nol5), mRNA |
Nol5 |
1.559 |
1.333 |
|
| NM_018869 |
G protein-coupled receptor kinase 5 (Gprk5), mRNA |
Gprk5 |
1.924 |
1.246 |
|
| NM_019420 |
UDP-Gal:betaGalNAc beta 1,3-galactosyltransferase, polypeptide
4 (B3galt4), mRNA |
B3galt4 |
2.25 |
1.456 |
|
| NM_019472 |
myosin X (Myo10), mRNA |
Myo10 |
1.493 |
1.792 |
|
| NM_019545 |
hydroxyacid oxidase (glycolate oxidase) 3 (Hao3), mRNA |
Hao3 |
1.808 |
2.184 |
|
| NM_019650 |
golgi SNAP receptor complex member 2 (Gosr2), mRNA |
Gosr2 |
1.879 |
0.53 |
|
| NM_019657 |
hydroxysteroid (17-beta) dehydrogenase 12 (Hsd17b12), mRNA |
Hsd17b12 |
1.656 |
1.481 |
|
| NM_019662 |
Ras-related associated with diabetes (Rrad), mRNA |
Rrad |
1.751 |
4.105 |
|
| NM_019676 |
phospholipase C, delta 1 (Plcd1), mRNA |
Plcd1 |
1.464 |
1.81 |
|
| NM_019681 |
frequenin homolog (Drosophila) (Freq), mRNA |
Freq |
1.784 |
2.083 |
|
| NM_019694 |
leucine zipper-EF-hand containing transmembrane protein 1
(Letm1), mRNA |
Letm1 |
1.579 |
1.459 |
|
| NM_019703 |
phosphofructokinase, platelet (Pfkp), mRNA |
Pfkp |
1.976 |
2.002 |
|
| NM_019741 |
solute carrier family 2 (facilitated glucose transporter),
member 5 (Slc2a5), mRNA |
Slc2a5 |
1.899 |
2.228 |
|
| NM_019770 |
transmembrane emp24 domain trafficking protein 2 (Tmed2), mRNA |
Tmed2 |
1.976 |
2.073 |
|
| NM_019776 |
expressed sequence AL033314 (AL033314), mRNA |
AL033314 |
1.885 |
1.391 |
|
| NM_019914 |
myeloid |
Mllt11 |
1.67 |
1.086 |
|
| NM_019948 |
C-type lectin domain family 4, member e (Clec4e), mRNA |
Clec4e |
2.485 |
1.824 |
|
| NM_020497 |
zinc finger protein (C2H2 type) 276 (Zfp276), mRNA |
Zfp276 |
2.163 |
1.936 |
|
| NM_020581 |
protein tyrosine phosphatase, receptor type, M (Ptprm), mRNA |
Angptl4 |
1.611 |
0.456 |
|
| NM_020597 |
beta-microseminoprotein (Msmb), mRNA |
Msmb |
2.025 |
2.716 |
|
| NM_020623 |
microtubule-associated protein 1 B (Mtap1b), mRNA |
Pth |
2.537 |
1.17 |
|
| NM_021274 |
chemokine (C-X-C motif) ligand 10 (Cxcl10), mRNA |
Cxcl10 |
2.204 |
1 |
|
| NM_021415 |
calcium channel, voltage-dependent, T type, alpha 1H subunit
(Cacna1h), mRNA |
Cacna1h |
1.616 |
1.278 |
|
| NM_021442 |
myelodysplasia syndrome 1 homolog (human) (Mds1), mRNA |
Mds1 |
1.51 |
1.371 |
|
| NM_021565 |
midnolin (Midn), mRNA |
Midn |
2.707 |
1.058 |
|
| NM_021600 |
cholinergic receptor, nicotinic, delta polypeptide (Chrnd),
mRNA |
Chrnd |
1.519 |
2.384 |
|
| NM_021878 |
jumonji, AT rich interactive domain 2 (Jarid2), mRNA |
Jarid2 |
1.632 |
1.08 |
|
|
| Table 3e: Genes
commonly expressed > 1.0 log2ratio at 36 hours in both basal and luminal
cell lines in response to doxorubicin (Troester et al., 2004) |
|
| GenBank Acc id |
Gene description |
HUGO id |
12 hours |
24 hours |
36 hours |
12 hours |
24 hours |
36 hours |
| NM_012205 |
3-hydroxyanthranilate 3,4-dioxygenase |
HAAO |
0 |
2.448 |
1.548 |
0 |
-2.028 |
1.185 |
| NM_001613 |
actin, alpha 2, smooth muscle, aorta |
ACTA2 |
0.158 |
0.114 |
0.742 |
1.55 |
1.586 |
0.316 |
| AL110226 |
ADAM metallopeptidase with thrombospondin type 1 motif, 7 |
ADAMTS7 |
1.517 |
1.744 |
1.105 |
0 |
5.099 |
2.223 |
| NM_001115 |
adenylate cyclase 8 (brain) |
ADCY8 |
0 |
-0.851 |
1.953 |
0 |
0.691 |
1.832 |
| NM_001116 |
adenylate cyclase 9 |
ADCY9 |
0.093 |
-0.025 |
1.223 |
0.652 |
0.837 |
1.48 |
| NM_004900 |
apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3B |
APOBEC3B |
0.316 |
1.367 |
2.063 |
0 |
0 |
1.539 |
| NM_001088 |
arylalkylamine N-acetyltransferase |
AANAT |
1.785 |
-0.682 |
2.518 |
0.063 |
0.541 |
1.127 |
| AB006627 |
astrotactin 1 |
ASTN1 |
-1.168 |
0.46 |
1.788 |
0.874 |
0.129 |
1.757 |
| NM_000927 |
ATP-binding cassette, sub-family B (MDR/TAP), member 1 |
ABCB1 |
0.272 |
-0.064 |
1.866 |
0 |
0.106 |
1.816 |
| U82987 |
BCL2 binding component 3 |
BBC3 |
-1.072 |
0.185 |
1.074 |
1.589 |
1.243 |
2.229 |
| AK027255 |
bolA homolog 2 (E. coli) |
BOLA2 |
0 |
0 |
2.339 |
0.204 |
0.68 |
1.3 |
| NM_001334 |
cathepsin O |
CTSO |
0 |
-0.286 |
1.757 |
0 |
-2.653 |
1.468 |
| NM_004364 |
CCAAT/enhancer binding protein (C/EBP), alpha |
CEBPA |
-0.89 |
-0.177 |
1.257 |
0.701 |
1.396 |
1.435 |
| NM_004590 |
chemokine (C-C motif) ligand 16 |
CCL16 |
0 |
0 |
1.548 |
0 |
0 |
1.245 |
| NM_012128 |
chloride channel, calcium activated, family member 4 |
CLCA4 |
0 |
0 |
3.223 |
0 |
0 |
1.472 |
| NM_006829 |
chromosome 10 open reading frame 116 |
C10orf116 |
-0.018 |
0.619 |
1.473 |
0.833 |
2.063 |
1.687 |
| NM_006658 |
chromosome 7 open reading frame 16 |
C7orf16 |
0 |
0.303 |
1.533 |
-0.086 |
0 |
1.515 |
| AK022885 |
chromosome 9 open reading frame 16 |
C9orf16 |
0 |
3.987 |
1.719 |
0 |
0 |
1.731 |
| NM_018990 |
chromosome X open reading frame 9 |
CXorf9 |
0 |
-1.162 |
1.548 |
0 |
0 |
1.089 |
| NM_006837 |
COP9 constitutive photomorphogenic homolog subunit 5
(Arabidopsis) |
COPS5 |
0.296 |
-0.584 |
1.539 |
0.634 |
-0.154 |
1.662 |
| NM_016190 |
cornulin |
CRNN |
0 |
0 |
4.566 |
0 |
-1.967 |
1.487 |
| NM_001297 |
cyclic nucleotide gated channel beta 1 |
CNGB1 |
0 |
0.121 |
1.065 |
0 |
-1.063 |
1.428 |
| NM_000389 |
cyclin-dependent kinase inhibitor 1A (p21, Cip1) |
CDKN1A |
0.399 |
0.702 |
0.637 |
2.144 |
2.912 |
1.961 |
| NM_001399 |
ectodysplasin A |
EDA |
0.497 |
-2.424 |
4.566 |
0 |
0 |
1.093 |
| NM_006579 |
emopamil binding protein (sterol isomerase) |
EBP |
0.068 |
0.62 |
1.027 |
0.84 |
0.799 |
1.442 |
| NM_018948 |
ERBB receptor feedback inhibitor 1 |
ERRFI1 |
3.051 |
0 |
1.234 |
0 |
-1.235 |
1.025 |
| NM_004110 |
ferredoxin reductase |
FDXR |
0.191 |
0.49 |
0.832 |
2.539 |
2.283 |
2.499 |
| AF086021 |
fibroblast growth factor receptor 2 (bacteria-expressed
kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome,
Jackson-Weiss syndrome) |
FGFR2 |
0.007 |
0.597 |
1.405 |
1.912 |
0.406 |
1.306 |
| AB033101 |
filamin A interacting protein 1 |
FILIP1 |
0 |
-0.308 |
2.081 |
0 |
0.485 |
1.267 |
| NM_005971 |
FXYD domain containing ion transport regulator 3 |
FXYD3 |
-0.544 |
1.151 |
2.032 |
1.088 |
2.347 |
2.617 |
| NM_017986 |
G protein-coupled receptor 172B |
GPR172B |
0 |
0 |
2.9 |
0.775 |
0 |
1.32 |
| NM_002082 |
G protein-coupled receptor kinase 6 |
GRK6 |
0 |
0.081 |
1.506 |
0.216 |
0.249 |
1.101 |
| AL049930 |
gelsolin (amyloidosis, Finnish type) |
GSN |
0 |
0.211 |
1.638 |
0 |
0 |
1.645 |
| NM_005270 |
GLI-Kruppel family member GLI2 |
GLI2 |
1.168 |
0.432 |
1.976 |
0.518 |
-0.159 |
1.035 |
| NM_000402 |
glucose-6-phosphate dehydrogenase |
G6PD |
0.194 |
0.181 |
1.037 |
0.194 |
1.36 |
1.673 |
| NM_000152 |
glucosidase, alpha; acid (Pompe disease, glycogen storage
disease type II) |
GAA |
-0.787 |
-0.882 |
1.312 |
-1.205 |
0.648 |
1.993 |
| NM_004864 |
growth differentiation factor 15 |
GDF15 |
-1.417 |
1.806 |
1.259 |
2.227 |
3.011 |
2.556 |
| AK024311 |
HCLS1 binding protein 3 |
HS1BP3 |
-0.555 |
-0.3 |
1.52 |
-0.532 |
0.297 |
1.739 |
| NM_007232 |
histamine receptor H3 |
HRH3 |
2.493 |
0.265 |
2.358 |
-0.334 |
0.324 |
1.327 |
| NM_018942 |
homeobox (H6 family) 1 |
HMX1 |
0 |
0.2 |
2.579 |
0 |
0 |
1.663 |
| NM_000197 |
hydroxysteroid (17-beta) dehydrogenase 3 |
HSD17B3 |
0 |
0.987 |
2.859 |
0 |
1.347 |
1.231 |
| AK026416 |
hypothetical gene supported by AK026416 |
FLJ22763 |
1.307 |
0 |
2.489 |
1.308 |
0 |
1.406 |
| NM_016490 |
hypothetical protein LOC51252 |
LOC51252 |
1.262 |
-0.493 |
3.575 |
3.251 |
0.716 |
1.234 |
| NM_002164 |
indoleamine-pyrrole 2,3 dioxygenase |
INDO |
0 |
-0.777 |
2.233 |
0 |
0 |
1.314 |
| NM_000889 |
integrin, beta 7 |
ITGB7 |
-1.22 |
-1.135 |
1.036 |
1.84 |
0.772 |
1.483 |
| NM_000417 |
interleukin 2 receptor, alpha |
IL2RA |
-2.702 |
-0.956 |
1.154 |
-0.074 |
-1.25 |
1.427 |
| NM_002274 |
keratin 13 |
KRT13 |
1.155 |
-0.121 |
1.595 |
0.34 |
-1.375 |
1.551 |
| NM_002275 |
keratin 15 |
KRT15 |
0.816 |
0.483 |
0.934 |
0.073 |
-0.351 |
0.893 |
| AB007977 |
KIAA0508 protein |
KIAA0508 |
0.041 |
0.414 |
1.679 |
2.27 |
0 |
1.672 |
| M94362 |
lamin B2 |
LMNB2 |
0.633 |
-0.594 |
1.054 |
0 |
-0.235 |
1.522 |
| AB010099 |
laminin, alpha 5 |
LAMA5 |
-0.965 |
-0.127 |
1.593 |
0 |
-0.033 |
1.44 |
| NM_018494 |
leucine-rich repeats and death domain containing |
LRDD |
0.689 |
1.325 |
1.545 |
0.651 |
1.827 |
1.739 |
| NM_005664 |
makorin, ring finger protein, 3 |
MKRN3 |
1.713 |
1.192 |
4.139 |
-0.004 |
2.058 |
1.33 |
| NM_002391 |
midkine (neurite growth-promoting factor 2) |
MDK |
-1.196 |
-0.854 |
1.269 |
0.997 |
2.219 |
2.104 |
| Z34278 |
mucin 5AC, oligomeric mucus/gel-forming |
MUC5AC |
0 |
-0.038 |
2.284 |
-0.266 |
-0.706 |
1.572 |
| AF111782 |
myosin, heavy chain 13, skeletal muscle |
MYH13 |
0 |
0 |
1.567 |
0 |
0 |
1.037 |
| NM_018161 |
NAD synthetase 1 |
NADSYN1 |
0 |
-0.365 |
1.741 |
-0.028 |
-0.054 |
1.527 |
| NM_004545 |
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa |
NDUFB1 |
0 |
-1.009 |
1.977 |
-1.21 |
0.032 |
1.341 |
| NM_006161 |
neurogenin 1 |
NEUROG1 |
2.627 |
-0.459 |
2.186 |
-0.072 |
0 |
1.435 |
| NM_006174 |
neuropeptide Y receptor Y5 |
NPY5R |
0.702 |
0 |
2.323 |
0.21 |
0.302 |
1.346 |
| NM_002531 |
neurotensin receptor 1 (high affinity) |
NTSR1 |
0 |
0.86 |
3.065 |
0 |
0 |
1.373 |
| NM_000265 |
neutrophil cytosolic factor 1, (chronic granulomatous disease,
autosomal 1) |
NCF1 |
0 |
-0.654 |
1.104 |
0 |
0 |
1.06 |
| AL161977 |
PCTAIRE protein kinase 3 |
PCTK3 |
0 |
0.461 |
2.892 |
-1.938 |
-2.692 |
1.008 |
| NM_003559 |
phosphatidylinositol-4-phosphate 5-kinase, type II, beta |
PIP5K2B |
0 |
-0.35 |
1.045 |
-0.806 |
-0.166 |
1.176 |
| NM_016341 |
phospholipase C, epsilon 1 |
PLCE1 |
0 |
0 |
5.641 |
3.402 |
0 |
3.856 |
| NM_003311 |
pleckstrin homology-like domain, family A, member 2 |
PHLDA2 |
1.336 |
0.127 |
1.175 |
1.076 |
1.58 |
1.915 |
| NM_005761 |
plexin C1 |
PLXNC1 |
0 |
3.445 |
3.065 |
0 |
0 |
1.481 |
| NM_002237 |
potassium voltage-gated channel, subfamily G, member 1 |
KCNG1 |
-1.471 |
0.282 |
1.268 |
1.214 |
2.253 |
1.031 |
| NM_002238 |
potassium voltage-gated channel, subfamily H (eag-related),
member 1 |
KCNH1 |
0 |
-0.906 |
3.065 |
-1.296 |
-0.296 |
1.4 |
| NM_016335 |
proline dehydrogenase (oxidase) 1 |
PRODH |
-0.234 |
1.609 |
2.475 |
1.384 |
3.413 |
2.194 |
| AB014554 |
protein tyrosine phosphatase, receptor type, f polypeptide
(PTPRF), interacting protein (liprin), alpha 3 |
PPFIA3 |
-0.212 |
1.714 |
2.339 |
0.085 |
0.808 |
2.131 |
| NM_002590 |
protocadherin 8 |
PCDH8 |
0 |
0.513 |
3.317 |
-0.55 |
0 |
1.106 |
| NM_005855 |
receptor (G protein-coupled) activity modifying protein 1 |
RAMP1 |
0 |
-0.993 |
1.016 |
0.224 |
-0.081 |
1.423 |
| AF190500 |
relaxin/insulin-like family peptide receptor 1 |
RXFP1 |
0 |
0.002 |
1.405 |
-0.115 |
0 |
1.202 |
| NM_003952 |
ribosomal protein S6 kinase, 70kDa, polypeptide 2 |
RPS6KB2 |
-0.046 |
-0.157 |
1.008 |
1.078 |
0.088 |
1.487 |
| NM_002965 |
S100 calcium binding protein A9 |
S100A9 |
2.628 |
1.366 |
1.688 |
1.805 |
3.527 |
3.105 |
| NM_003064 |
secretory leukocyte peptidase inhibitor |
SLPI |
0 |
1.104 |
2.339 |
0 |
-0.507 |
2.085 |
| NM_004636 |
sema domain, immunoglobulin domain (Ig), short basic domain,
secreted, (semaphorin) 3B |
SEMA3B |
0.461 |
0.948 |
1.291 |
0.197 |
-0.15 |
1.991 |
| NM_014752 |
signal peptidase complex subunit 2 homolog (S. cerevisiae) |
SPCS2 |
-0.086 |
0.612 |
1.58 |
0.944 |
0.648 |
1.014 |
| NM_006280 |
signal sequence receptor, delta (translocon-associated protein
delta) |
SSR4 |
0.051 |
-0.076 |
1.084 |
0.593 |
0.829 |
1.21 |
| NM_006937 |
SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) |
SUMO2 |
1.054 |
-0.207 |
1.016 |
0 |
-0.242 |
1.023 |
| NM_020372 |
solute carrier family 22 (organic cation transporter), member
17 |
SLC22A17 |
-2.358 |
-1.034 |
1.893 |
0.029 |
0.002 |
1.003 |
| AK092242 |
solute carrier family 29 (nucleoside transporters), member 4 |
SLC29A4 |
-4.176 |
-1.421 |
1.054 |
1.665 |
2.073 |
1.125 |
| NM_006424 |
solute carrier family 34 (sodium phosphate), member 2 |
SLC34A2 |
0 |
-0.008 |
2.441 |
1.187 |
0 |
1.821 |
| NM_006933 |
solute carrier family 5 (inositol transporters), member 3 |
SLC5A3 |
-0.562 |
-0.267 |
1.584 |
0 |
0 |
1.353 |
| AK021876 |
solute carrier family 9 (sodium/hydrogen exchanger), member 5 |
SLC9A5 |
0 |
0 |
2.859 |
-1.742 |
0 |
1.194 |
| NM_006941 |
SRY (sex determining region Y)-box 10 |
SOX10 |
0 |
-0.579 |
1.011 |
-0.16 |
0.476 |
1.224 |
| NM_003169 |
suppressor of Ty 5 homolog (S. cerevisiae) |
SUPT5H |
1.152 |
-0.011 |
3.405 |
0 |
0 |
1.315 |
| NM_005411 |
surfactant, pulmonary-associated protein A1 |
SFTPA1 |
0 |
-0.517 |
1.931 |
0 |
0 |
2 |
| NM_015685 |
syndecan binding protein (syntenin) 2 |
SDCBP2 |
-0.265 |
-0.539 |
2.304 |
0.753 |
1.605 |
1.436 |
| AF086210 |
thioredoxin-like 5 |
TXNL5 |
0 |
-0.399 |
4.139 |
1.656 |
1.5 |
1.506 |
| D87292 |
thiosulfate sulfurtransferase (rhodanese) |
TST |
0.999 |
0.99 |
1.433 |
0.298 |
0.948 |
1.2 |
| AK026349 |
transcription elongation factor A (SII)-like 8 |
TCEAL8 |
0.8 |
-0.474 |
1.869 |
0 |
0 |
2.169 |
| AL133074 |
tumor protein p53 inducible nuclear protein 1 |
TP53INP1 |
1.097 |
0 |
1.096 |
2.123 |
2.448 |
1.058 |
| NM_004881 |
tumor protein p53 inducible protein 3 |
TP53I3 |
1.168 |
1.059 |
1.176 |
2.578 |
3.877 |
3.031 |
| NM_003331 |
tyrosine kinase 2 |
TYK2 |
0 |
0 |
1.154 |
0 |
1.585 |
1.09 |
| NM_003376 |
vascular endothelial growth factor A |
VEGFA |
0.142 |
-0.201 |
0.774 |
0.528 |
1.83 |
0.922 |
| NM_016373 |
WW domain containing oxidoreductase |
WWOX |
0.432 |
0.751 |
1.016 |
0.549 |
0.774 |
1.065 |
| NM_003456 |
zinc finger protein 205 |
ZNF205 |
0.229 |
0.659 |
1.077 |
-0.15 |
0.961 |
1.338 |
| AF217226 |
zinc finger protein 286 |
ZNF286 |
-0.797 |
-1.08 |
1.128 |
0 |
-0.671 |
1.105 |
| AK024438 |
zinc finger protein 41 homolog (mouse) |
ZFP41 |
0.73 |
0 |
1.154 |
0 |
0 |
1.56 |
| AA086471 |
|
|
2.696 |
1.204 |
1.747 |
0.979 |
2.461 |
2.344 |
| AA401441 |
|
|
-0.024 |
0.172 |
1.158 |
-0.369 |
0.576 |
0.698 |
| AA418082 |
|
|
0 |
3.155 |
1.846 |
0 |
0 |
1.415 |
| AA428477 |
|
|
1.894 |
-0.055 |
0.532 |
0.868 |
0.508 |
1.242 |
| AA434048 |
|
|
0.399 |
0.614 |
0.537 |
0.722 |
2.066 |
1.768 |
| AA443300 |
|
|
-1.361 |
-1.057 |
1.086 |
0.316 |
1.111 |
1.4 |
| AA464420 |
|
|
0.092 |
-0.46 |
0.926 |
0.601 |
-0.703 |
0.8 |
| AA478298 |
|
|
-0.03 |
0.558 |
1.244 |
0.42 |
2.314 |
1.553 |
| AA487429 |
|
|
0.362 |
-0.062 |
0.801 |
0.599 |
2.434 |
1.442 |
| AA599177 |
|
|
0.566 |
1.722 |
1.372 |
0.485 |
1.04 |
1.468 |
| AB015616 |
|
|
2.3 |
0 |
2.323 |
0 |
0 |
1.178 |
| AB019571 |
|
|
0 |
3.894 |
3.567 |
0 |
0 |
1.296 |
| AF052146 |
|
|
0.838 |
1.038 |
2.152 |
1.104 |
0.858 |
1.729 |
| AF070602 |
|
|
0 |
-0.675 |
3.247 |
0 |
-0.119 |
1.48 |
| AF075068 |
|
|
1.309 |
-0.687 |
1.013 |
0.862 |
0.348 |
1.064 |
| AF085847 |
|
|
0.599 |
-0.891 |
5.223 |
0 |
0 |
1.088 |
| AF085929 |
|
|
0.58 |
0 |
3.831 |
0 |
0 |
1.087 |
| AF085935 |
|
|
0.698 |
0.077 |
2.859 |
0 |
0 |
1.522 |
| AF086134 |
|
|
0 |
1.474 |
3.223 |
0 |
0 |
1.952 |
| AF086204 |
|
|
0 |
0 |
2.472 |
0 |
0 |
1.255 |
| AF088076 |
|
|
-1.828 |
-1.535 |
1.234 |
0 |
2.124 |
1.288 |
| AF147370 |
|
|
0 |
-0.098 |
2.62 |
1.273 |
0 |
1.659 |
| AF161403 |
|
|
0 |
0 |
3.316 |
0 |
0 |
1.165 |
| AJ227860 |
|
|
0.52 |
0.321 |
1.307 |
0.681 |
0 |
1.315 |
| AK000073 |
|
|
0 |
-0.018 |
1.713 |
0 |
-0.258 |
2.116 |
| AK000205 |
|
|
0.177 |
0 |
3.931 |
0 |
0 |
1.298 |
| AK000894 |
|
|
0 |
-0.98 |
1.474 |
0.664 |
-0.042 |
1.105 |
| AK001007 |
|
|
-1.195 |
-0.396 |
1.052 |
0.652 |
1.076 |
1.288 |
| AK001136 |
|
|
2.078 |
0 |
2.358 |
0 |
0 |
1.22 |
| AK001906 |
|
|
0.322 |
0 |
3.016 |
0 |
0 |
1.092 |
| AK021502 |
|
|
0 |
0.29 |
2.101 |
0.144 |
0.196 |
1.297 |
| AK022117 |
|
|
-0.663 |
0.654 |
1.114 |
-0.517 |
2.636 |
1.522 |
| AK022129 |
|
|
1.238 |
0 |
1.931 |
0.516 |
0.712 |
3.012 |
| AK022136 |
|
|
0.596 |
0 |
1.161 |
0 |
0 |
3.137 |
| AK022259 |
|
|
-0.158 |
0 |
1.141 |
0.153 |
-0.273 |
1.675 |
| AK022343 |
|
|
0.162 |
0.913 |
1.832 |
0 |
0 |
1.098 |
| AK022379 |
|
|
0 |
0.565 |
1.405 |
-0.674 |
0 |
1.301 |
| AK022390 |
|
|
0.528 |
0 |
1.789 |
0 |
0 |
1.423 |
| AK023307 |
|
|
0 |
0 |
1.548 |
1.347 |
0 |
1.211 |
| AK023536 |
|
|
-0.73 |
0.656 |
1.109 |
1.377 |
0.188 |
1.069 |
| AK023571 |
|
|
0 |
0 |
1.405 |
0 |
0 |
1.794 |
| AK023640 |
|
|
0 |
-0.107 |
1.789 |
0 |
0 |
1.424 |
| AK023898 |
|
|
2.134 |
0 |
1.977 |
0 |
0 |
3.427 |
| AK024194 |
|
|
0 |
0.778 |
3.557 |
0 |
0 |
1.373 |
| AK024579 |
|
|
0 |
0 |
1.993 |
0 |
0 |
1.599 |
| AK024606 |
|
|
0 |
-0.015 |
2.775 |
0 |
0 |
1.744 |
| AK024809 |
|
|
-0.1 |
-0.094 |
1.249 |
-0.154 |
0.49 |
1.007 |
| AK025150 |
|
|
0 |
0.894 |
1.953 |
0 |
0 |
1.247 |
| AK026079 |
|
|
0.387 |
1.676 |
1.533 |
2.637 |
3.838 |
2.748 |
| AK026267 |
|
|
0.628 |
-0.515 |
1.931 |
0 |
0 |
1.948 |
| AK026273 |
|
|
0.676 |
1.3 |
3.781 |
0 |
0 |
1.441 |
| AK026856 |
|
|
1.305 |
0 |
1.548 |
1.101 |
3.208 |
1.735 |
| AK026947 |
|
|
0 |
-1.031 |
3.247 |
0 |
0.216 |
1.23 |
| AK027082 |
|
|
1.511 |
-1.597 |
1.822 |
0.4 |
0 |
1.727 |
| AL049351 |
|
|
0 |
0.353 |
1.016 |
0.787 |
0 |
1.119 |
| AL049377 |
|
|
0.014 |
-0.03 |
1.679 |
1.308 |
0 |
1.028 |
| AL049986 |
|
|
0.193 |
-0.359 |
2.489 |
-1.125 |
-0.866 |
2.01 |
| AL359654 |
|
|
0 |
0 |
1.993 |
2.343 |
0 |
1.044 |
| AL389879 |
|
|
0 |
0 |
3.816 |
0 |
0 |
1.813 |
| AY007143 |
|
|
2.632 |
0.059 |
1.676 |
0.624 |
2.373 |
1.253 |
| L07265 |
|
|
0 |
0 |
1.409 |
0 |
0 |
1.884 |
| L16951 |
|
|
0 |
0.913 |
1.692 |
0.837 |
1.77 |
1.895 |
| L77581 |
|
|
0 |
1.794 |
2.339 |
0 |
0 |
1.291 |
| M11167 |
|
|
0.612 |
0.994 |
2.589 |
1.648 |
1.218 |
1.921 |
| M32220 |
|
|
1.803 |
0.627 |
3.09 |
0 |
0 |
1.737 |
| N33920 |
|
|
0 |
-0.636 |
1.846 |
-0.286 |
0.352 |
1.378 |
| N51424 |
|
|
0.219 |
0.096 |
1.879 |
0.876 |
0 |
1.011 |
| N75498 |
|
|
0.39 |
0.752 |
1.252 |
0.196 |
0.314 |
0.514 |
| R33642 |
|
|
-0.15 |
0.476 |
1.038 |
1.236 |
0.658 |
1.25 |
| S94540 |
|
|
0 |
0 |
2.578 |
0 |
0 |
2.113 |
| U80764 |
|
|
0.109 |
0.182 |
1.058 |
1.405 |
0.694 |
1.252 |
| X02067 |
|
|
0.361 |
0.689 |
2.031 |
0.829 |
1.293 |
1.193 |
| Y12019 |
|
|
0.802 |
0.148 |
1.011 |
3.106 |
0 |
1.968 |
| Z11852 |
|
|
0 |
0.244 |
1.065 |
0 |
0 |
1.478 |
|
|
|
|
|
|
|
|
|
|