GEN-SNiP Supplementary Data 1) Output for 75 full length mitochondrial genomes (Palanichamy, et al., 2004) 2) Output for HIV RT sequences (Gurusinghe, et al., 1995) 1) From: GENSNiP-Result@argusbio.com Sent: Monday, December 11, 2006 9:02 AM To: dwhyte@argusbio.com Subject: GEN-SNIP:Result Output of the GEN-SNiP run dtd 11/12/2006 --------------------------------------------------------------------------------------------------------------------------------------- List of all polymorphisms are:- AY713976| C150T A263G 315insC A750G A1438G A2706G A4769G C7028T A8860G G13889A A15326G A15682G AY713977| A73G A263G 315insC A750G A1438G A4769G A5120G C5216T A8860G A15326G C15439T A16051G T16519C AY713978| T146C T152C A263G 309insC 315insC A750G A1438G A4769G A8860G T10166C T13020C A15326G C16256T AY713979| T72C A263G 309insC 315insC A750G A1438G A2706G G4580A A4769G C7028T A8860G T12438C A13105G A15326G C15904T T16263C T16298C AY713980| A263G 309insC 315insC G709A A750G A1008G A1438G G1768A C2259T A4769G A8860G C14872T A15326G T16519C AY713981| A263G 315insC T471C 498insC A750G A1438G A2706G A4769G C6983T C7028T G8485A A8860G G9182A G9804A G15314A A15326G A16293G T16311C AY713982| A263G 309insC 315insC 573insC A750G A1438G C2259T A4745G A4769G A8860G G12771A C13680T C14872T A15326G A16230G AY713983| A73G A93G A200G A263G 309insC 315insC 522delC 523delA A750G A1438G A2706G A2833G A4769G C7028T T8594C A8860G T8987C T9708C T10084C A10754G G11719A T14088C G14544A C14766T A15326G C16266T T16304C T16519C A16524G AY713984| A73G A93G A200G A263G 309insC 315insC 522delC 523delA A750G A1438G A2706G A2833G A4769G C7028T T8594C A8860G T8987C T9708C T10084C A10754G G11719A T14088C G14544A C14766T A15326G C16266T T16304C T16519C A16524G AY713985| A73G T152C A263G 309insC 315insC 522delC 523delA A750G C979T A1438G A2706G T4511C A4769G C7028T T8594C A8860G A10754G A11293G G11719A T13635C G14040A G14544A C14766T A15326G C15385T T15479C T16304C T16311C T16356C A16524G AY713986| T72C A73G T152C T195C A263G 309insC 315insC 522delC 523delA A750G A1438G A2706G A4769G A5153G C7028T T7193C T7861C A8860G A9336G T11935C C12061T A15326G T16217C T16325C AY713987| C150T A263G 315insC A337G C594T A750G A1438G A2706G C4171T A4769G C7028T A8860G T13572C G13889A G14569A A15326G A15682G G15884A T16356C AY713988| C150T A263G 309insC 309insC 315insC T480C A750G A1438G A2706G A3858G G4655A A4769G C7028T G7754A G8251A T15115C A15326G T16131C T16304C T16311C AY713989| A73G T152C A263G 315insC 522delC 523delA 597insT A750G A1438G A2706G A4769G A6629G C7028T T8594C A8860G A10754G A11293G G11719A T13635C G14040A G14544A C14766T C14990T A15326G C15385T C16266T T16304C T16325C T16356C T16519C A16524G AY713990| A73G T199C A263G 309insC 309insC 315insC G513A A750G A1438G A1811G A2706G A4769G G5262A C7028T G8572A A8860G G11150A A11467G G11719A A12308G G12372A C14766T A15326G T15629C A16051G T16154C A16206C A16230G T16311C T16519C AY713991| A73G T152C A263G 315insC 522delC 523delA 597insT A750G A1438G A2706G A4769G A6629G C7028T T8594C A8860G A10754G A11293G G11719A T13635C G14040A G14544A C14766T C14990T A15326G C15385T C16266T T16304C A16309G T16325C T16356C T16519C A16524G AY713992| A73G T195C A263G 309insC 309insC 315insC A750G T794C A1438G A1811G A2706G A4769G C7028T A8860G A11084G T11361C T11383C A11467G G11719A T11794C A12308G G12372A C14766T A15326G C15556T A16051G A16206C A16230G T16311C AY713993| A73G T152C A263G 315insC 522delC 523delA A750G T1095C A1438G A2706G C3894T A4769G C7028T T8594C A8860G A10754G A11293G G11719A T13635C G13708A G14040A G14544A C14766T A15326G C15385T T16189C C16256T C16266T T16271C T16304C T16356C T16519C AY713994| A73G T195C T246C A263G 315insC A750G A1438G A2706G G3531A T3644C A4769G G4991A C7028T A7364G A8860G A9254G G11719A T12285C C14766T A15326G T16093C C16179T A16227G C16245T G16274A C16278T T16362C T16519C AY713995| T55C T57G T204C A263G 309insC 315insC G709A A750G A1438G A4769G T6253C A8860G C11143T T11410C T14180C C14953T A15326G C16366T AY713996| A73G T152C A263G 315insC 522delC 523delA A750G A1438G A2706G G3531A A4769G A6485G C7028T C7400T T8594C A8860G A10754G A11293G G11719A A11866G T13635C G14040A G14544A C14766T A15326G C15385T C16248T T16304C T16311C T16356C T16519C A16524G AY713997| A73G T152C A263G 315insC 522delC 523delA 597insT A750G A1438G A2706G A4769G A6629G C7028T T7686C T8594C A8860G A10754G A11293G G11719A T13635C G14040A G14544A C14766T C14990T A15326G C15385T C16266T T16304C A16309G T16325C T16356C T16519C A16524G AY713998| C64T A73G A263G 309insC 315insC A750G A1438G A2706G A4769G C5875T C7028T A8188G 8276insC A8446G T8594C C8622T A8860G C9296T A9503G A10754G G11719A A12507G G13958C G14544A C14766T A15326G T16304C A16524G G16526A AY713999| 60insT C64T A263G 309insC 309insC 315insC A750G A1438G A2355G T2442C A2706G T3847C A4769G C7028T T8705C A8860G T11152C T12408C C12951T C13188T C14766T A15326G T15674C T16126C T16243C T16362C T16519C AY714000| A73G T152C A263G 315insC 522delC 523delA 597insT A750G A1438G A2706G A4769G A6629G C7028T T8594C A8860G A10754G A11293G G11719A T13635C G14040A C14266T G14544A C14766T C14990T A15326G C15385T C16147T C16266T T16304C A16309G T16325C T16356C T16519C A16524G AY714001| A73G T152C A263G 315insC 522delC 523delA A750G A1438G G2056A A2706G G3316A T4232C A4769G T5442C C6164T G6764A C7028T G8584A A8860G A9156G A9242G G10688A C11047A G11719A T12714C T13474C C14766T T15055C A15326G T16519C AY714002| A73G T152C A263G 315insC 522delC 523delA 597insT A750G A1438G A2706G A4769G A5102G A6353G C7028T T8594C A8860G T9083C A10754G A11293G G11719A T13635C G14040A G14544A C14766T C14990T A15326G C15385T T16124C T16304C A16309G T16325C T16356C T16362C A16524G AY714003| A73G A263G 315insC A750G A1438G A2706G T3197C A4769G C7028T C8441T A8860G G9477A A9667G A11467G G11719A A12308G G12372A T13617C C14766T A14793G A15218G A15326G G15596A G16129A C16192T C16256T C16270T C16291T A16399G AY714004| A73G T152C A263G 309insC 315insC 522delC 523delA A750G T980C A1438G A1811G A2706G C3741T A4769G C5360T C7028T A7673G C8137T C8684T A8860G C10142T A11467G G11719A A12308G G12372A T13500C C14131T G14569A C14766T A15244G A15326G T16093C A16318T T16519C AY714005| A73G T152C A263G 315insC 522delC 523delA A750G A1438G A1811G A2706G A4769G C5790A A6218G C7028T T8023C C8676T A8860G C9767T G10143A A11467G G11719A A12308G G12372A C14155T C14766T T14935C G15043A A15061G A15326G A16051G C16179T A16240C T16519C AY714006| A73G T195C A214G A263G 315insC A750G A1438G C2331A A2706G C4025T A4769G T5074C A6125G C7028T A8508G G8584A A8860G G11719A C12603T T14374C C14766T A15326G A15799G A15924G C16186T C16192T T16288C C16291T T16311C G16390A T16519C AY714007| A73G C151T T152C T195C A263G 315insC A750G A1438G A2706G T4216C C7028T T7657C T8473C C8513Y A8860G G9932A G10685A G11719A T12414C A12654G T13500C T14020C G14305A C14766T A15326G C16071T T16126C C16261T T16519C AY714008| A73G T199C T204C A263G 315insC 522delC 523delA A750G T953C A1438G G1719A A2706G C3783A A4769G C6713T C7028T G7830A A8860G G9947A T10238C G11719A G12501A C12705T T13437C A13780G C14766T A15326G C16223T G16274A C16301T T16356C AY714009| A73G T154C T195C A234G A263G 309insC 315insC 356insC C456T 522delC 523delA A750G A1019G A1438G T2392C A2706G A2755G A3384G A4769G A6485G C7028T T7759C A8860G C9449T G11719A G12007A G13194A T13215C C14766T A15326G G15928A G16390A T16519C AY714010| A73G T152C A263G 309insC 309insC 315insC T742C A750G A1438G A1811G A2706G C3208T A4769G C5790A C7028T A8860G A9109G A11467G G11719A A12308G G12372A C13934T A14687G C14766T T14935C A15061G A15326G C15825T A16051G C16169T C16234T C16256T C16278T T16519C AY714011| A73G T195C C198T A263G 315insC G709A A750G A1438G A2706G A2755G A3384G C4484T A4769G A5510G C5911T C7028T T7759C A8860G C9449T T9716C T11113C G11719A T13215C C13782T C14766T T16093C C16292T A16399G T16519C AY714012| A73G A243G A263G 315insC 522delC 523delA G709A A750G A1438G A2706G A2755G A3384G A4769G A5510G C5911T A6131G C7028T T7759C C8646T A8860G C9449T T9716C G11719A T13215C C13782T C14766T A15791G C16193T T16311C T16519C AY714013| A73G C151T T152C A263G A270G 315insC 522delC 523delA A750G T980C A1438G A1811G A2706G C3741T A4769G C5360T C5486T C7028T C8137T C8684T A8860G C10142T A11467G G11719A A12308G G12372A T13281C T13500C G14569A C14766T A15326G C16167T C16187T A16309G A16318T T16519C AY714014| A73G C151T T152C A263G A270G 309insC 315insC 522delC 523delA A750G T980C A1438G A1811G A2706G C3741T A4769G C5360T C5486T C7028T C8137T C8684T A8860G A9476G C10142T A11467G G11719A A12308G G12372A T13281C T13500C G14569A C14766T A15326G C16167T A16309G A16318T T16519C AY714015| A73G T152C T195C A263G 309insC 315insC G709A A750G A1438G G1888A A2706G T4216C A4769G A4917G C7028T G8697A A8860G T9899C T10463C A11251G G11719A C12633A G13368A C14766T G14905A A15326G C15452A A15607G G15928A T16126C A16163G C16186T T16189C C16242T C16294T T16519C AY714016| A73G A263G 309insC 315insC G709A A750G G930A A1438G G1888A A2706G T4216C A4769G A4917G G5147A G6182A C7028T G8697A A8860G T10463C C11242G A11251G G11719A A11812G G13368A A14233G C14766T G14905A A15326G C15452A A15607G G15928A T16126C C16294T C16296T T16304C T16519C AY714017| A73G T146C T152C A263G C280T 315insC C324T 522delC 523delA G709A A750G A1438G A1811G A2706G G2831A A3480G T4561C A4769G C7028T A8860G G9055A T9698C T9716C A10550G C11151T T11299C A11467G G11719A A12308G G12372A C14167T C14766T T14798C A15326G T16224C T16311C T16519C AY714018| A73G T119C G143A A189G T192C C194T T195C T196C T204C G207A A263G 315insC 524insA 524insC 524insA 524insC G709A A750G T1243C A1438G A2706G A3505G A4769G G5046A G5460A C7028T G8251A A8860G G8994A C11674T G11719A A11947G T12215C T12414C C12705T C14766T A15326G G15884C C16223T C16286T C16292T T16311C T16519C AY714019| A73G T195C T217C G228A A263G 309insC 315insC A750G T1291C A1438G A2706G A4769G A5894G C7028T G8584A A8860G T8889C T11075C G11719A C12133T T12285C A13391G C14058T C14766T T15067C C15100T A15326G G16129A G16213A G16274A G16319A T16362C G16390A T16519C AY714020| A73G T146C A263G 315insC A750G A1438G A1811G A2775G T3732C G3915A A4093G A4769G A5186T T6620C C7028T A8860G T9716C G10688A A11467G G11719A A11845G C12106T A12308G G12372A G13194A G13708A C14766T C15049T A15326G A16051G C16168T AY714021| A73G T146C G185A A263G 315insC 315insC C338T 522delC 523delA A750G A1438G C1531T A2706G A4769G C5348T T6293C G6480A C7028T C7981T A8860G G10373A C10631T G11719A C12745T A13557G T13768A C14553T C14766T A15326G C15334T G15884A T16172C T16304C T16362C T16519C AY714022| A73G A263G 315insC G709A A750G A1438G G1888A A2706G T2850C T4216C A4769G A4917G T5892C T7022C C7028T G8697A A8860G T10463C A11251G G11719A A11812G G13368A T13965C A14233G A14687G C14766T G14905A A15326G C15452A A15607G G15928A T16126C C16294T C16296T AY714023| A73G C150T A263G 315insC 522delC 523delA A750G A1438G A1811G A2706G A3397G A4188G C4640A A4769G C7028T A8860G T9656C T10187C A11467G G11719A A12308G G12372A T13743C A14139G A14527G C14766T A15326G T15454C G15812A T16093C C16266G A16343G G16346A T16368C AY714024| A73G T146C T152C A263G 309insC 315insC A750G A1438G G1442A A1804G C2282T A2706G A4769G T6248C A6254G C7028T G8557A A8860G A9051G T9110C A10289G G11719A C12432T A13105G T13111C T13830C C14064T A14554G C14766T C16260T C16261T C16286T A16293G T16311C G16319A T16362C AY714025| A73G T146C T152C A234G A263G 315insC A750G A1438G A1811G G1888A A4769G A5186T C7028T A8860G C9094T A9614G T10124C A11467G G11719A C12106T A12308G G12372A T12793C G13194A T13656C C14766T C15049T A15326G G15930A A16051G C16188T T16209C C16239T T16352C C16353T AY714026| A73G T152C A263G 309insC 315insC A508G 524insA 524insC 524insA 524insC A750G A1438G A1811G C2322T A2706G A3203G A3720G A4769G A5390G T5426C C6045T T6152C C7028T A8860G A10398G A10876G A11467G G11719A A12308G G12372A T13020C T13734C C14766T A15326G A15907G A16051G T16092C G16129C A16182C A16183C T16189C T16362A AY714027| A73G T146C T152C A234G A263G 315insC A750G A1438G A1811G G1888A G4113A A4769G A5186T C7028T A8860G C9094T A9614G C9830T A11467G G11719A C12106T A12308G G12372A T12793C G13194A T13656C C14766T C15049T A15326G G15930A A16051G T16209C C16239T T16352C C16353T AY714028| A73G T146C T195C A263G 315insC C459T A750G A1438G C2386A A2706G C3637T A4012G C4739T A4769G C7028T A7202G A8860G G9142A C9449T T10084C C11332T A11620G G11719A T12285C T14470C C14766T T15115C A15326G G16129A T16172C A16216C C16266T G16274A T16362C AY714029| A73G C150T T204C A263G 309insC 315insC 522delC 523delA G709A A750G T980C A1438G G1888A A2706G C2829T T4216C A4769G A4917G C7028T G8697A A8860G G9139A T10463C A11002G A11251G G11719A A11812G G13368A A14233G C14766T G14905A A15326G C15452A A15607G G15928A T16126C G16153A C16294T C16296T T16519C AY714030| A73G A263G 309insC 315insC A750G A1438G G1442A G1462A A2706G A4129G A4769G T6248C C7028T T7870C G8485A A8860G A9051G T9110C G10143A A10289G T10915C G11719A A13105G T13404C T13830C C14766T A15326G G15346A C15885T C16234T C16260T C16261T T16304C G16319A T16362C AY714031| A73G A263G 315insC A750G A1438G G1719A A2706G A4769G T5063C T6011C C6164T C7028T A7076G C7492T G8545A A8860G A9545G A10232G T11626C G11719A C12705T A13434G C14533T C14766T T15262C A15326G T15972C A16051G T16092C C16111T G16129A C16223T T16311C AY714032| A73G T152C A263G 309insC 315insC A750G A1438G G2056A A2706G 3158insT G3316A A4225G T4232C A4769G G5237A T5442C G6764A C7028T C7274T G8584A A8860G A9156G A9242G G9966A C11047A T11506C G11719A T12714C C13758T C14766T T15055C A15326G T16126C A16181G T16209C T16362C T16519C AY714033| A73G A263G C271T C295T 315insC C462T T489C A750G A1438G A2706G G3010A T4216C A4769G G5460A C7028T G8269A A8494G A8860G A10398G A11251G G11719A A12612G T13656C G13708A T13879C C14766T A15326G C15452A T15941C C16069T T16126C G16145A C16222T C16261T G16274A T16519C AY714034| A73G G185A G228A A263G C295T 315insC C462T T482C T489C A750G A1438G A2706G G3010A T3394C T4216C A4769G G5773A C5972T C7028T A7184G A8860G A10398G T10463C A11251G G11719A A12612G G13708A C14766T T14798C A15326G C15452A C16069T T16093C C16111T T16126C AY714035| A73G C242T A263G C295T 315insC C462T T489C A750G A1438G T2158C A2706G G3010A T4216C A4769G G5460A C7028T G8269A G8557A A8860G A10398G A11251G G11719A G12007A A12612G G13708A T13879C C14766T A15326G C15452A C16069T T16126C G16145A T16172C C16222T C16261T AY714036| A73G T152C T195C T204C A263G 309insC 315insC G709A A750G A1438G G1888A A2706G T4216C A4769G A4917G C7028T G8697A A8860G G9548A T9899C G10143A T10463C A11251G G11719A T12028C C12633A G13368A C14281T C14766T G14905A A15326G C15452A A15607G G15928A T16126C A16163G C16186T T16189C G16244A C16294T T16519C AY714037| A73G T152C A263G 309insC 315insC A606G G709A A750G A1438G G1888A A2706G T4216C A4769G A4917G A5747G T6221C C7028T T7680C G8697A C8859T A8860G T10463C A11251G G11719A A11812G T13260C G13368A G13708A A14233G C14766T G14905A A15326G C15452A A15607G G15928A T16086C T16126C C16294T C16296T T16519C AY714038| A73G A263G C285T 309insC 309insC 315insC A750G A1438G C2218T A2706G A4769G G4991A G6026A C7028T T7581C C8766T A8860G T9083C G9182A A11467G G11719A A12308G G12372A T12793C T12879C A13104G A14070G G14364A C14766T T15115C G15148A G15217A A15326G A15954C A16182C A16183C T16189C T16249C C16465T T16519C AY714039| A73G T119C A189G T195C T204C G207A A263G 315insC G709A A750G T1243C A1438G C2070T A2706G A3505G T4232C A4769G G5046A G5460A A5984G C7028T C7864T G8251A A8449G A8860G G8994A C11674T G11719A A11947G T12414C C12705T C13831A A14148G C14766T A15326G G15884C C16223T T16519C AY714040| A73G T152C T217C A263G 309insC 309insC 315insC C340T A508G 524insA 524insC A750G A1438G A1811G A2706G C3116T A3720G A4769G A5390G T5426C C6045T T6152C C7028T A8308G A8860G A10876G C11197T A11467G G11719A T11732C A12308G G12372A T13020C T13734C C14766T A15326G A15907G A16051G G16129C G16153A A16182C A16183C T16189C T16362C T16519C AY714041| A73G T199C T204C G207A T250C A263G 315insC 455insT 573insC 573insC 573insC 573insC 573insC A750G A1438G G1719A A2706G A4227G A4529T A4769G T6227C G6734A C7028T G8251A A8860G G9966A T10034C T10238C A10398G G11719A G12501A C12705T T13635C A13780G C14766T G15043A A15326G A15924G G16129A T16189C C16223T T16311C G16391A T16519C AY714042| A73G A263G C285T 309insC 309insC 315insC A750G A1438G C2218T C2380T A2706G A4769G G4991A G6026A C7028T T7581C A8860G T10253C G10364A A11467G G11719A A12308G G12372A T12879C A13104G C13680T A14070G G14364A C14766T T15115C G15148A G15217A A15954C A16182C A16183C T16189C T16249C A16318C T16519C C16527T AY714043| A73G T146C A189G C194T T195C T204C G207A A263G 309insC 315insC G709A A750G T1243C T1406C A1438G C2389T A2706G A3505G A4769G G5046A G5460A C7028T G8251A T8477G A8860G G8994A T10245C C11674T G11719A A11947G T12414C C12705T A13263G T14484C C14766T A15326G C15490T T15784C G15884C C16223T C16292T T16297C T16519C AY714044| A73G C114T T152C A263G 309insC 315insC C497T A750G T1189C A1438G A1811G T2352C A2706G A3480G A4769G C7028T A7729G A8860G G9055A T9698C T9800C A10398G A10550G T11204C T11299C A11467G G11719A G11914A A12308G G12372A T13326C C14167T C14766T T14798C A15326G A15562G G15731A A15924G T16224C T16311C T16519C AY714045| A73G A263G C295A 315insC A750G T1391C A1438G A2706G G3337A A3360G A4026G A4769G A4917G A5378G C5586T A5823G C6557T T6671C C7028T A7424G T7547C T8388C A8860G A8887G A10658G A10825G G11719A C12064T C13948T G14323A C14632T C14766T A15326G T15721C C16176T T16311C T16519C AY714046| A73G T204C G207A G228A A234G 249delA A263G 309insC 315insC A750G A1309G A1438G T1452C A2706G T2763C C3533T G3849A G3882A A4769G C5461T T5503C T6827C C7028T A7046G T8400C A8860G A8988G G11719A G12007A G12651A T14488C C14766T G15148A A15326G G15884A A16051G T16093C A16182C A16183C T16189C C16218T C16292T T16362C G16438A AY714047| A73G T152C A257G A263G 299delC 309insC 315insC A373G T480C A750G C1185T A1438G G1598A A2706G T4062C A4225G A4769G A5836G T6413C C7028T T7268G A7490G G8584A A8805G A8860G T9174C C10631A T11009C G11719A G12406A A13236G C14194T G14305A C14766T C15307T A15326G G15927A T16172C A16182C A16183C T16189C C16261T T16298C A16299G AY714048| A73G A153G T195C G207A G228A A234G A263G 309insC 309insC 315insC A750G A1309G A1438G T1452C A1811G A2706G T2763C G3849A G3882A A4769G T5503C T6827C C7028T A7046G T8400C A8860G A8988G G10685A A11272G G11719A G12007A G12651A T14488C C14766T G15148A A15326G G15884A A16051G T16093C A16182C A16183C T16189C C16218T C16278T C16292T C16320T AY714049| A73G T152C T217C A263G 315insC 315insC C340T A508G 524insA 524insC 573insC 573insC 573insC 573insC 573insC A750G G988A A1438G A1811G A2706G A3720G G4491A A4769G A5390G T5426C C6045T T6152C C7028T A8860G A10876G A11467G G11719A A12308G G12372A A12612T T13020C T13734C C14766T G14831A A15326G T15479C A15562G A15907G A16051G C16082T T16126C G16129C T16189C C16256T T16298C T16362C T16519C AY714050| A73G C114T T152C A263G 299delC 309insC 309insC 315insC A373G T480C A750G A1438G G1598A A2706G T4062C A4225G A4769G G4991A G5147A A5836G C7028T T7268G A7490G G8584A A8805G A8860G T9174C C10631A T11009C G11719A G12406A A13236G A13857G C14194T G14305A A14417G A14750G C14766T C15307T G15323A A15326G G16129A A16182C A16183C T16189C T16298C A16299G 2) Output for HIV RT sequences (Gurusinghe, et al., 1995) From: GENSNiP-Result@argusbio.com Sent: Monday, December 11, 2006 11:19 AM To: davidwhyte@comcast.net Subject: GEN-SNIP:Result Output of the GEN-SNiP run dtd 11/12/2006 --------------------------------------------------------------------------------------------------------------------------------------- List of all polymorphisms are:- Z31374| C9T G18A G120A A121C G135A C186T G199A T204A A209G T243C G248A G327A G361T T404C C494T C531A G612A T629G C640T 642insT 645delC G786A G792A C814G G830A A852G A856C A877G G889A A921G G924A G1074A C1157T G1173A G1185A T1251C G1269A Z31367| C9T G18A G120A A121T A132T G135A C186T A195G G199A G263C A318G G352A G361C T404C C494T T510C C531A G612A T629G G632A C640T 642insT 645delC G792A C813T C814G G830A A852G A856C G862T A877G G889A A921G G924A A984C G1074A C1106T G1155C C1157T A1169G G1173A G1185A A1225T T1251C G1269A Z31366| T6C C9T G18C T63C A99T G120A A121T A132T G135A G178A C186T A195G G199A A209G T240A C261T G263C T348C G361C T404C T486C C494T C531A G612A T629G G632A C640T 642insT 645delC A747G G786A G792A C814G G830A A852G A856C A877G G889A A921G G924A G1074A C1106T C1157T A1169G G1173A G1185A T1251C Z31365| C9T G18C A99T G120A A121T A132T G135A C186T G199A A209G A318G G361C T404C C494T C531A G612A T629G G632A C640T 642insT 645delC G786A G792A C814G G830A A852G A856C A877G G889A A921G G924A G1074A C1106T C1157T A1169G G1173A G1185A T1251C Z31354| C9T G18A A99T G135A C186T G248A G327A T404C C494T A519G C531A G612A G632A C640T G786A G792A C813T C814G G830A A852G A856C C865T A877G G889A A921G G924A G1074A C1157T G1185A T1251C C1281T Z31020| C9T G18A A87G A99T G120A A121C G135A C186T G199A G263T C289T A318G G361C T404C C494T C531A G612A T629G C640T 642insT 645delC C814G G830A A852G A856C A877G G889A A921G G924A G1074A C1106T C1157T G1185A A1221G T1251C C1281T REFERENCES Gurusinghe, A.D., Land, S.A., Birch, C., McGavin, C., Hooker, D.J., Tachedjian, G., Doherty, R. and Deacon, N.J. (1995) Reverse transcriptase mutations in sequential HIV-1 isolates in a patient with AIDS, J Med Virol, 46, 238-243. Palanichamy, M.G., Sun, C., Agrawal, S., Bandelt, H.J., Kong, Q.P., Khan, F., Wang, C.Y., Chaudhuri, T.K., Palla, V. and Zhang, Y.P. (2004) Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia, Am J Hum Genet, 75, 966-978.