The First ISB Book Biological Petri Nets   Edgar Wingender Preface Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0001, 2010 Ralf Hofestädt Petri nets and the simulation of metabolic networks Published in the Special Issue: Petri Nets for Metabolic Networks, ISB 03:0028, 2003 R. Hofestädt and S. Thelen Quantitative modeling of biochemical networks Published in ISB 01:0006, 1998 Ionela Zevedei-Oancea and Stefan Schuster Topological analysis of metabolic networks based on Petri net theory Published in the Special Issue: Petri Nets for Metabolic Networks, ISB 03:0029, 2003 Ming Chen and Ralf Hofestaedt Quantitative Petri net model of gene regulated metabolic networks in the cell Published in the Special Issue: Petri Nets for Metabolic Networks, ISB 03:0030, 2003 Klaus Voss, Monika Heiner and Ina Koch Steady state analysis of metabolic pathways using Petri nets Published in the Special Issue: Petri Nets for Metabolic Networks, ISB 03:0031, 2003 Hiroshi Matsuno, Yukiko Tanaka, Hitoshi Aoshima, Atsushi Doi, Mika Matsui and Satoru Miyano Biopathways representation and simulation on hybrid functional Petri net Published in the Special Issue: Petri Nets for Metabolic Networks, ISB 03:0032, 2003 Atsushi Doi, Sachie Fujita, Hiroshi Matsuno, Masao Nagasaki and Satoru Miyano Constructing biological pathway models with hybrid functional Petri net Published in ISB 04:0023, 2004 Ina Koch, Markus Schüler and Monika Heiner STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks Published in the Special Issue: Dagstuhl Seminar "Integrative Bioinformatics", ISB 05:0014, 2004 Takako Takai-Igarashi Ontology based standardization of Petri net modeling for signaling pathways Published in ISB 05:0047, 2005 Atsushi Doi, Masao Nagasaki, Hiroshi Matsuno and Satoru Miyano Simulation based validation of the p53 transcriptional activity with hybrid functional Petri net Published in ISB 06:0001, 2006 Anna Gambin, Sławomir Lasota and Michał Rutkowski Analyzing stationary states of gene regulatory network using Petri nets Published in ISB 06:0010, 2006 Satoru Miyano and Masao Nagasaki Cell Illustrator 4.0: A Computational Platform for Systems Biology Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0002, 2010 Sebastian Janowski, Benjamin Kormeier, Thoralf Töpel, Klaus Hippe, Ralf Hofestädt, Nils Willassen, Rafael Friesen, Sebastian Rubert, Daniela Borck, Peik Haugen and Ming Chen Modeling of cell-cell communication processes using Petri nets in the example of quorum sensing Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0003, 2010 Yoshimasa Miwa, Chen Li, Qi-Wei Ge, Hiroshi Matsuno and Satoru Miyano On determining firing delay time of transitions for Petri net based signaling pathways by introducing stochastic decision rules Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0004, 2010 Jialiang Wu, Zhen Qi and Eberhard O. Voit Impacts of delays and noise on dopamine signal transduction Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0005, 2010 Attila Csikász-Nagy and Ivan Mura Role of mRNA gestation and senescence in noise reduction during the cell cycle Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0006, 2010 Ralf H. Bortfeldt, Stefan Schuster and Ina Koch Exhaustive analysis of the modular structure of the spliceosomal assembly network &ndash a Petri net approach Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0007, 2010 Kerstin Kaufmann, Masao Nagasaki and Ruy Jáuregui Modelling the molecular interactions in the flower developmental network of Arabidopsis thaliana Published in the Special Issue: Petri Net Applications in Molecular Biology, ISB 10:0008, 2010

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