ISB Home


Aims and Scope
Instructions to Authors Submission of manuscripts
Editorial Board
Supported by

BIS Home


Volume 6
Article                Atsushi Doi, Masao Nagasaki, Hiroshi Matsuno and Satoru Miyano
Simulation based validation of the p53 transcriptional activity with hybrid functional Petri net
Article Leszek Konieczny, Michal Brylinski and Irena Roterman
Gauss-function-based model of hydrophobicity density in proteins
Article Imtiaz A. Khan, Matthew Mort, Paul R. Buckland, Michael C. O’Donovan, David N. Cooper and Nadia A. Chuzhanova
In silico discrimination of single nucleotide polymorphisms and pathological mutations in human gene promoter regions by means of local DNA sequence context and regularity
Article Daniel R. Matute, Emiliano Barreto-Hernandez and Laurent Falquet
Hunting for insect-specific protein domains
Communication Anirban Dutta, Shashi Kr. Singh, Payel Ghosh, Runni Mukherjee, Sayak Mitter and Debashis Bandyopadhyay
In silico identification of potential therapeutic targets in the human pathogen Helicobacter pylori
Article Kazuharu Arakawa, Yoichi Nakayama and Masaru Tomita
GPAC: Benchmarking the sensitivity of genome informatics analysis to genome annotation completeness
Article Ralf Wessel, Volker Foos, Allan Aspelmeier, Martin Jürgens, Adolf Graessmann and Andreas Klein
CorrXpression - identification of significant groups of genes and experiments by means of correspondence analysis and ratio analysis
Article Workshop "GEOMETRY OF GENOME"
Lokesh Kumar, Matthias Futschik and Hanspeter Herzel
DNA motifs and sequence periodicities
Article Daisuke Komura, Kunihiro Nishimura, Shumpei Ishikawa, Binaya Panda, Jing Huang, Hiroshi Nakamura, Sigeo Ihara, Michitaka Hirose, Keith W. Jones and Hiroyuki Aburatani
Noise reduction from genotyping microarrays using probe level information
Article Anna Gambin, Sławomir Lasota and Michał Rutkowski
Analyzing stationary states of gene regulatory network using Petri nets
Article Harpreet Kaur and G. P. S. Raghava
Prediction of Cα-H···O and Cα-H···π interactions in proteins using recurrent neural network
Communication Aswin Sai Narain Seshasayee
Social behavior of the yeast protein-protein interaction network
Article Christoph Bock and Jürgen Hesser
Analysis and prediction of helix shift errors in homology modeling
Article Satoshi Mizuta, Hikaru Munakata, Abulimiti Aimaiti, Ichitaro Oya, Kenji Oosawa and Toshio Shimizu
Analysis of tandem repeats found in 44 prokaryotic genomes
Article Tamanna Anwar, Sunil K. Lal and Asad U. Khan
In silico analysis of genes nucleoprotein, neuraminidase and hemagglutinin: a comparative study on different strains of influenza A (bird flu) virus sub-type H5N1
Article Patnala Kiranmayi and Pamarthi Maruthi Mohan
Metal transportome of Neurospora crassa
Article A. Bankhead III, Nancy S. Magnuson and Robert B. Heckendorn
Gene knockout experiments to quantify a G2/M genetic network simulation for mammary cancer susceptibility
Article Peter Gennemark, Bodil Nordlander, Stefan Hohmann and Dag Wedelin
A simple mathematical model of adaptation to high osmolarity in yeast
Article Achuthsankar S. Nair and T. Mahalakshmi
Are categorical periodograms and indicator sequences of genomes spectrally equivalent?
Communication Michael Bose and Robert D. Barber
Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences
Article B. Balamurugan, M.N.A. Md. Roshan, Daliah Michael, M. Ambaree, S. Divya, H. Keerthana, M. Seemanthini and K. Sekar
SMS: Sequence, Motif and Structure - A database on the structural rigidity of peptide fragments in non-redundant proteins
Communication Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant and Todd E. Scheetz
First Exons and Introns - A survey of GC content and gene structure in the human genome
Article Lorenz Bülow, Nils Ole Steffens, Claudia Galuschka, Martin Schindler and Reinhard Hehl
AthaMap: from in silico data to real transcription factor binding sites
Communication Francesco Piva and Giovanni Principato
RANDNA: a random DNA sequence generator
Article Steven E. Massey
Basic faced alpha helices are widespread in the peptide extensions of the eukaryotic aminoacyl-tRNA synthetases
Communication Meena Kishore Sakharkar, Pandjassarame Kangueane, Kishore Ramaji Sakharkar and Zhaowei Zhong
Huge proteins in the human proteome and their participation in hereditary diseases
Article Rainer Merkl
AMIGOS: a method for the inspection of genomic organisation or structure and its application to characterise conserved gene arrangements
Communication Gang Su, Binchen Mao and Jin Wang
MACO: A gapped-alignment scoring tool for comparing transcription factor binding sites
Article Saikat Chakrabarti, Gowri Manohari, Ganesan Pugalenthi and Ramanathan Sowdhamini
SSToSS - Sequence-Structural Templates of Single-member Superfamilies
Article Gordon Blackshields, Iain M. Wallace, Mark Larkin and Desmond G. Higgins
Analysis and comparison of benchmarks for multiple sequence alignment
Communication Chan-Eng Chong, Boon-San Lim, Sheila Nathan and Rahmah Mohamed
In silico analysis of Burkholderia pseudomallei genome sequence for potential drug targets
Communication Andrés J. Gutiérrez Escobar, Aylan Farid Arenas and Jorge Enrique Gómez-Marin
Molecular evolution of serine/arginine splicing factors family (SR) by positive selection
Article Chandrashekar S. Reddy, Arunachalam Manonmani, Meenakshi Babu and Ramanathan Sowdhamini
Enhanced structure prediction of gene products containing class III adenylyl cyclase domains
Article Alessandra C. Faria-Campos, Sérgio V. A. Campos, Francisco Prosdocimi, Glaura C. Franco, Glória R. Franco and J. Miguel Ortega
Efficient secondary database driven annotation using model organism sequences
Communication Pratip Shil, Niraj Dudani and Pandit B. Vidyasagar
ISHAN: sequence homology analysis package
Article Mamoun Ahram, Zoi I. Litou, Ruihua Fang and Ghaith Al-Tawallbeh
Estimation of membrane proteins in the human proteome
Article Melissa J. Davis, Fasheng Zhang, Zheng Yuan and Rohan D. Teasdale
MemO: A consensus approach to the annotation of a protein's membrane organization
Opinion Paras Chopra and Akhil Kamma
Engineering life through Synthetic Biology
Communication Junichi Sugahara, Nozomu Yachie, Yasuhiko Sekine, Akiko Soma, Motomu Matsui, Masaru Tomita and Akio Kanai
SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level
Article Mark Doderer, Kihoon Yoon, John Salinas and Stephen Kwek
Protein subcellular localization prediction using a hybrid of similarity search and error-correcting output code techniques that produces interpretable results
Article P. Nataraj Sekhar, P. B. Kavi Kishor, L. Ananda Reddy, P. Mondal, A. K. Dash, M. Kar, S. Mohanty and S. C. Sabat
In silico modeling and hydrogen peroxide binding study of rice catalase
Article Vito Librando, Danilo Gullotto and Zelica Minniti
Automated molecular library generation of proteic fragments by virtual proteolysis for molecular modelling studies
Article Abdelouahab Chikhi, Abderrahmane Bensegueni, Abderrahmane Boulahrouf and Mustapha Bencharif
Theoretical study of Escherichia coli peptide deformylase inhibition by several drugs
Article Alfonso Benítez-Páez
Sequence analysis of the Receptor Activity-Modifying Proteins family, new putative peptides and structural conformation inference
Article Nitesh Kumar Singh, S. Mahalaxmi Selvam and Paulsharma Chakravarthy
T-iDT : Tool for identification of Drug Target in bacteria and validation by Mycobacterium tuberculosis
Article Jorge Andrade, Lisa Berglund, Mathias Uhlén and Jacob Odeberg
Using Grid technology for computationally intensive applied bioinformatics analyses
Article Adrian E. H. Png, Keng Wah Choo, Cheryl I. P. Lee, Siew Hong Leong and Oi Lian Kon
Primer design for whole genome amplification using genetic algorithms
Article Shinsuke Dohkan, Asako Koike and Toshihisa Takagi
Improving the performance of an SVM-based method for predicting protein-protein interactions
Article Tae-Min Kim and Myeong Ho Jung
Identification of transcriptional regulators using binding site enrichment analysis
Article Najl V. Valeyev, A Kristina Downing, Andrei I. Skorinkin, Iain D. Campbell and Nikolai V. Kotov
A calcium dependent de-adhesion mechanism regulates the direction and rate of cell migration: a mathematical model
Article Kevin Bleakley, Véronique Giudicelli, Yan Wu, Marie-Paule Lefranc and Gérard Biau
IMGT standardization for statistical analyses of T cell receptor junctions: the TRAV-TRAJ example
Article Michal Brylinski, Marek Kochanczyk, Leszek Konieczny and Irena Roterman
Sequence-structure-function relation characterized in silico
Communication Saju Joy, Parvathy S. Nair, Ramkumar Hariharan and M. Radhakrishna Pillai
Detailed comparison of the protein-ligand docking efficiencies of GOLD, a commercial package and Arguslab, a licensable freeware
Article B. Jayashree, Ramu Punna, P. Prasad, Kassahun Bantte, C. Tom Hash, Subhash Chandra, David A. Hoisington and Rajeev K. Varshney
A database of simple sequence repeats from cereal and legume expressed sequence tags mined in silico: survey and evaluation
Communication Nobuaki Kono, Kazuharu Arakawa and Masaru Tomita
MEGU: Pathway mapping web-service based on KEGG and SVG

The Bioinformation Systems e.V.-Team - Feel free to mail us!
copyright © > Bioinformation Systems e.V. < 1997, 1998 / Production by: Bioinformation Systems e.V.-Team
In Silico is also a registered Trademark of In Silico Technologies, Inc.